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BaseInfo

ncRNA ID	novel_gra_miR506
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr9:38539722-38539841 [+]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	1 - AUCAGGGAUUUUAGCUGACUGCAU - 24
Stem-loop(if miRNA)	---A            -G   ACU   U   --------------UUC   CUCUAUGGGAUCUUCUU     UCAGGGAUUUUA  CUG   GCA UGG                 GAU                 C     ||||||||||||  |||   ||| |||                 |||                 U     GGUUUCUAAGAU  GAC   CGU ACU                 AGG                 U UAUC            AA   -GU   U   UAACUUCUCUCGCUCCU   GCUUCUUCUUCUUUUUC
Stem-loop sequence	AUCAGGGAUUUUAGCUGACUGCAUUGGUUCGAUCUCUAUGGGAUCUUCUUCUUCUUUUUCUUCUUCUUCGGGAUCCUCGCUCUCUUCAAUUCAUUGCUGCAGAAUAGAAUCUUUGGCUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012581365.1	ncRNA:24   UACGUCAGUCGAUUUUAGGGACUA   1   **||*||||*|||||||=|||||| targets:1714   CAGCUGUCACCUAAAAUUCCUGAU   1737 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii kinesin-like protein NACK1 (LOC105763230), transcript variant X4, mRNA	kinesin-like protein NACK1(LOC105763230)	coding protein	psRNATarget
XM_012581363.1	ncRNA:24   UACGUCAGUCGAUUUUAGGGACUA   1   **||*||||*|||||||=|||||| targets:1737   CAGCUGUCACCUAAAAUUCCUGAU   1760 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii kinesin-like protein NACK1 (LOC105763230), transcript variant X2, mRNA	kinesin-like protein NACK1(LOC105763230)	coding protein	psRNATarget
XM_012581364.1	ncRNA:24   UACGUCAGUCGAUUUUAGGGACUA   1   **||*||||*|||||||=|||||| targets:1956   CAGCUGUCACCUAAAAUUCCUGAU   1979 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii kinesin-like protein NACK1 (LOC105763230), transcript variant X3, mRNA	kinesin-like protein NACK1(LOC105763230)	coding protein	psRNATarget
XM_012581362.1	ncRNA:24   UACGUCAGUCGAUUUUAGGGACUA   1   **||*||||*|||||||=|||||| targets:1980   CAGCUGUCACCUAAAAUUCCUGAU   2003 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii kinesin-like protein NACK1 (LOC105763230), transcript variant X1, mRNA	kinesin-like protein NACK1(LOC105763230)	coding protein	psRNATarget