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BaseInfo

ncRNA ID novel_gra_miR498
Species Gossypium raimondii
Class miRNA
Genome position Chr9:12374115-12374189 [-]
Reference genome Graimondii2_0
Source SRR616257
Length 21
Mature sequence(if miRNA) 1 - UGCCAAAGGAGAUUUGCCCUG - 21
Stem-loop(if miRNA) --      C       AA      A     -    UUU
  GGGCAA UCUCCUU  GCAAAA UGGAU GUGC   U
  |||||| |||||||  |||||| ||||| ||||
  CCCGUU AGAGGAA  CGUUUU GCUUA UACG   C
GU      U       AC      A     A    UUU
Stem-loop sequence GGGCAACUCUCCUUAAGCAAAAAUGGAUGUGCUUUUCUUUGCAUAAUUCGAUUUUGCCAAAGGAGAUUUGCCCUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012599961.1
ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1
  =||||||||||||||||||||
targets:955   UAGGGCAAAUCUCCUUUGGCA   975

0.0 PREDICTED: Gossypium raimondii probable ubiquitin-conjugating enzyme E2 24 (LOC105776971), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC105776971) coding protein psRNATarget
XM_012599961.1
ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1
  =*|||||||||||||||||||
targets:900   UUGGGCAAAUCUCCUUUGGCA   920

0.0 PREDICTED: Gossypium raimondii probable ubiquitin-conjugating enzyme E2 24 (LOC105776971), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC105776971) coding protein psRNATarget
XM_012599962.1
ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1
  =||||||||||||||||||||
targets:1031   UAGGGCAAAUCUCCUUUGGCA   1051

0.0 PREDICTED: Gossypium raimondii probable ubiquitin-conjugating enzyme E2 24 (LOC105776971), transcript variant X3, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC105776971) coding protein psRNATarget
XM_012599962.1
ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1
  =*|||||||||||||||||||
targets:976   UUGGGCAAAUCUCCUUUGGCA   996

0.0 PREDICTED: Gossypium raimondii probable ubiquitin-conjugating enzyme E2 24 (LOC105776971), transcript variant X3, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC105776971) coding protein psRNATarget
XM_012599960.1
ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1
  =||||||||||||||||||||
targets:1087   UAGGGCAAAUCUCCUUUGGCA   1107

0.0 PREDICTED: Gossypium raimondii probable ubiquitin-conjugating enzyme E2 24 (LOC105776971), transcript variant X1, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC105776971) coding protein psRNATarget
XM_012599960.1
ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1
  =*|||||||||||||||||||
targets:1032   UUGGGCAAAUCUCCUUUGGCA   1052

0.0 PREDICTED: Gossypium raimondii probable ubiquitin-conjugating enzyme E2 24 (LOC105776971), transcript variant X1, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC105776971) coding protein psRNATarget
XM_012594420.1
ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1
  =*|||||||||||||||||||
targets:823   UCGGGCAAAUCUCCUUUGGCA   843

0.0 PREDICTED: Gossypium raimondii probable ubiquitin-conjugating enzyme E2 24 (LOC105772919), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC105772919) coding protein psRNATarget
XM_012594419.1
ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1
  =*|||||||||||||||||||
targets:1097   UCGGGCAAAUCUCCUUUGGCA   1117

0.0 PREDICTED: Gossypium raimondii probable ubiquitin-conjugating enzyme E2 24 (LOC105772919), transcript variant X1, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC105772919) coding protein psRNATarget
XM_012594420.1
ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1
  =**||||||||||||||||||
targets:771   UUCGGCAAAUCUCCUUUGGCA   791

1.0 PREDICTED: Gossypium raimondii probable ubiquitin-conjugating enzyme E2 24 (LOC105772919), transcript variant X2, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC105772919) coding protein psRNATarget
XM_012594419.1
ncRNA:21   GUCCCGUUUAGAGGAAACCGU   1
  =**||||||||||||||||||
targets:1045   UUCGGCAAAUCUCCUUUGGCA   1065

1.0 PREDICTED: Gossypium raimondii probable ubiquitin-conjugating enzyme E2 24 (LOC105772919), transcript variant X1, mRNA probable ubiquitin-conjugating enzyme E2 24(LOC105772919) coding protein psRNATarget
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