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BaseInfo

ncRNA ID	novel_gra_miR484
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr9:12368358-12368444 [+]
Reference genome	Graimondii2_0
Source	SRR616257
Length	21
Mature sequence(if miRNA)	67 - UGCCAAUGGAGAUUUGCCCCG - 87
Stem-loop(if miRNA)	--       A     UC      CC   -    -  --CAC    C   GGGCAAA UCUCC  UGGCAG  AGC CAUU GC     UUCA C   ||||||| |||||  ||||||  ||| |||| ||     ||||   CCCGUUU AGAGG  ACCGUC  UCG GUGA CG     AAGU U GC       -     UA      UC   U    U  AUCUU    A
Stem-loop sequence	GGGCAAAAUCUCCUCUGGCAGCCAGCCAUUGCCACUUCACCUAUGAAUUCUAGCUAGUGUGCUCUCUGCCAAUGGAGAUUUGCCCCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012599961.1	ncRNA:21   GCCCCGUUUAGAGGUAACCGU   1   =*||||||||||||*|||||| targets:955   UAGGGCAAAUCUCCUUUGGCA   975 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii probable ubiquitin-conjugating enzyme E2 24 (LOC105776971), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC105776971)	coding protein	psRNATarget
XM_012599962.1	ncRNA:21   GCCCCGUUUAGAGGUAACCGU   1   =*||||||||||||*|||||| targets:1031   UAGGGCAAAUCUCCUUUGGCA   1051 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii probable ubiquitin-conjugating enzyme E2 24 (LOC105776971), transcript variant X3, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC105776971)	coding protein	psRNATarget
XM_012599960.1	ncRNA:21   GCCCCGUUUAGAGGUAACCGU   1   =*||||||||||||*|||||| targets:1087   UAGGGCAAAUCUCCUUUGGCA   1107 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii probable ubiquitin-conjugating enzyme E2 24 (LOC105776971), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC105776971)	coding protein	psRNATarget
XM_012594420.1	ncRNA:21   GCCCCGUUUAGAGGUAACCGU   1   =*||||||||||||*|||||| targets:823   UCGGGCAAAUCUCCUUUGGCA   843 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii probable ubiquitin-conjugating enzyme E2 24 (LOC105772919), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC105772919)	coding protein	psRNATarget
XM_012594419.1	ncRNA:21   GCCCCGUUUAGAGGUAACCGU   1   =*||||||||||||*|||||| targets:1097   UCGGGCAAAUCUCCUUUGGCA   1117 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii probable ubiquitin-conjugating enzyme E2 24 (LOC105772919), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC105772919)	coding protein	psRNATarget
XM_012594420.1	ncRNA:21   GCCCCGUUUAGAGGUAACCGU   1   =**|||||||||||*|||||| targets:771   UUCGGCAAAUCUCCUUUGGCA   791 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii probable ubiquitin-conjugating enzyme E2 24 (LOC105772919), transcript variant X2, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC105772919)	coding protein	psRNATarget
XM_012594419.1	ncRNA:21   GCCCCGUUUAGAGGUAACCGU   1   =**|||||||||||*|||||| targets:1045   UUCGGCAAAUCUCCUUUGGCA   1065 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii probable ubiquitin-conjugating enzyme E2 24 (LOC105772919), transcript variant X1, mRNA	probable ubiquitin-conjugating enzyme E2 24(LOC105772919)	coding protein	psRNATarget