ncRNA ID | novel_gra_miR479 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | Chr9:14188672-14188872 [+] |
Reference genome | Graimondii2_0 |
Source | SRR616255 |
Length | 24 |
Mature sequence(if miRNA) | 178 - AAAGACCCUGACCUUUAGCGGCGU - 201 |
Stem-loop(if miRNA) |
--          AA  U A             UUGCAAAAA              AA    AU  G           U GA --A               AC   GCCGCUAAAG  CA G UCUUUAGCGGCGU         AAGCGCUGCUAAAG  CAUG  CU UAGCGGUGUUU A  C   AAGCGCCGCUAAAGA  A   ||||||||||  || | |||||||||||||         ||||||||||||||  ||||  || ||||||||||| |  |   |||||||||||||||   CGGCGAUUUC  GU C AGAAAUCGCCGCG         UUCGCGGCGAUUUU  GUAC  GA AUCGCCACGAA U  G   UUUGCGGCGAUUUCU  U UG          CA  C C             UAAAGGAUG              CA    AU  A           - AG GAG               AA |
Stem-loop sequence | GCCGCUAAAGAACAUGAUCUUUAGCGGCGUUUGCAAAAAAAGCGCUGCUAAAGAACAUGAUCUGUAGCGGUGUUUUAGACAAAGCGCCGCUAAAGAACAUAAUCUUUAGCGGCGUUUGAGGGAUAAGCACCGCUAAAGUACAUGACUUUUAGCGGCGCUUGUAGGAAAUGCGCCGCUAAAGACCCUGACCUUUAGCGGCGU |