ncRNA ID | novel_gra_miR474 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | Chr8:49217736-49217820 [+] |
Reference genome | Graimondii2_0 |
Source | SRR616257 |
Length | 21 |
Mature sequence(if miRNA) | 1 - GGGAUGUUGGAAUGGCUCAAU - 21 |
Stem-loop(if miRNA) |
-  -        A               C   UUU   UGAG  GG GAUGUUGG AUGGCUCAAUCAAAU AAA   CCU    U  || |||||||| ||||||||||||||| |||   |||    U  CC CUAUAACC UGCCGAGUUAGUUUA UUU   GGG    U A  A        G               A   UCU   UGAU |
Stem-loop sequence | GGGAUGUUGGAAUGGCUCAAUCAAAUCAAAUUUCCUUGAGUUUUAGUGGGUCUUUUAAUUUGAUUGAGCCGUGCCAAUAUCACCA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_012630996.1 |
|
2.5 | PREDICTED: Gossypium raimondii heavy metal-associated isoprenylated plant protein 26-like (LOC105800088), transcript variant X2, mRNA | heavy metal-associated isoprenylated plant protein 26-like(LOC105800088) | coding protein | psRNATarget |