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BaseInfo

ncRNA ID novel_gra_miR474
Species Gossypium raimondii
Class miRNA
Genome position Chr8:49217736-49217820 [+]
Reference genome Graimondii2_0
Source SRR616257
Length 21
Mature sequence(if miRNA) 1 - GGGAUGUUGGAAUGGCUCAAU - 21
Stem-loop(if miRNA) -  -        A               C   UUU   UGAG
 GG GAUGUUGG AUGGCUCAAUCAAAU AAA   CCU    U
 || |||||||| ||||||||||||||| |||   |||    U
 CC CUAUAACC UGCCGAGUUAGUUUA UUU   GGG    U
A  A        G               A   UCU   UGAU
Stem-loop sequence GGGAUGUUGGAAUGGCUCAAUCAAAUCAAAUUUCCUUGAGUUUUAGUGGGUCUUUUAAUUUGAUUGAGCCGUGCCAAUAUCACCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012630996.1
ncRNA:21   UAACUCGGUAAGGUUGUAGGG   1
  |*|*||||||*||||||||||
targets:99   AAUAAGCCAUGCCAACAUCCC   119

2.5 PREDICTED: Gossypium raimondii heavy metal-associated isoprenylated plant protein 26-like (LOC105800088), transcript variant X2, mRNA heavy metal-associated isoprenylated plant protein 26-like(LOC105800088) coding protein psRNATarget