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BaseInfo

ncRNA ID	novel_gra_miR473
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr9:31956325-31956516 [-]
Reference genome	Graimondii2_0
Source	SRR616255;SRR616257
Length	24
Mature sequence(if miRNA)	169 - CUAAAGGUCUUGGUCUUUAGCGGU - 192
Stem-loop(if miRNA)	--      GU UU GU                 G     U  C        GU UU GU U              GG       C      C  UC   CUAAAG  C  G  CUUUAGCGGUGUUUUUC GAAAA CG CGCUAAAG  C  G  C UUAGCGGCGUUUUU  AAAAGCG CGCUAA GG  U   ||||||  |  |  ||||||||||||||||| ||||| || ||||||||  |  |  | ||||||||||||||  ||||||| |||||| ||   GAUUUC  G  C  GAAAUCGCCGCGAAAAG CUUUU GC GCGAUUUC  G  C  G AAUCGCCGCGAAAA  UUUUUGC GCGAUU CU  U GC      UG UU UG                 G     U  A        UU UU UG C              GG       A      U  UG
Stem-loop sequence	CUAAAGGUCUUGGUCUUUAGCGGUGUUUUUCGGAAAAUCGCCGCUAAAGGUCUUGGUCUUUAGCGGCGUUUUUGGAAAAGCGCCGCUAACGGUCUUGUUCUUUAGCGACGUUUUUGGAAAAGCGCCGCUAACGGUCUUGUUCUUUAGCGACGUUUUUCGGAAAAGCGCCGCUAAAGGUCUUGGUCUUUAGCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012599306.1	ncRNA:24   UGGCGAUUUCUGGUUCUGGAAAUC   1   *=****||=||||||||||||||| targets:2178   UUGAGGAAGGACCAAGACCUUUAG   2201 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii exocyst complex component EXO84B-like (LOC105776577), mRNA	exocyst complex component EXO84B-like(LOC105776577)	coding protein	psRNATarget
XM_012627970.1	ncRNA:24   UGG-----CGAUUUCUGGUUCUGGAAAUC   1   |=|-----|=||*|||||||||||*|||| targets:513   AUCAACGAGUUACAGACCAAGACCAUUAG   541 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transcription factor TGA6-like (LOC105798073), mRNA	transcription factor TGA6-like(LOC105798073)	coding protein	psRNATarget