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BaseInfo

ncRNA ID	novel_gra_miR463
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr8:6832671-6832893 [-]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	1 - AAGCUAAACGCACCGCACUGCACC - 24
Stem-loop(if miRNA)	--   GA             A                 -----------                        A     UU            C           ---GUA   -  UG   UGU  UGCGGUGCGUUUA CUUACUUUUUGUCUCAU           GCUACAGUAUCUAAUCUCACCGCC CCGCU  UUUUUACAUUAA CGUAGGUAAAC      UCA CC  G   |||  ||||||||||||| |||||||||||||||||           |||||||||||||||||||||||| |||||  |||||||||||| |||||||||||      ||| ||  G   ACG  ACGCCACGCAAAU GAAUGAAAAACAGAGUG           CGAUGUCAUAGAUUAGAGUGGCGG GGUGA  AAAAAUGUGAUU GCGUCCAUUUG      AGU GG  U CC   UC             C                 CGAUGUUAUAG                        C     -C            A           AAUGGC   A  UU
Stem-loop sequence	UGUGAUGCGGUGCGUUUAACUUACUUUUUGUCUCAUGCUACAGUAUCUAAUCUCACCGCCACCGCUUUUUUUUACAUUAACCGUAGGUAAACGUAUCACCUGGGUUUGGAUGACGGUAAGUUUACCUGCGAUUAGUGUAAAAACAGUGGCGGCGGUGAGAUUAGAUACUGUAGCGAUAUUGUAGCGUGAGACAAAAAGUAAGCUAAACGCACCGCACUGCACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012631288.1	ncRNA:24   CCACGUCACGCCACGCAAAUCGAA   1   |||||||||||||||*|||||||| targets:1311   GGUGCAGUGCGGUGCAUUUAGCUU   1334 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii 36.4 kDa proline-rich protein-like (LOC105800272), mRNA	36.4 kDa proline-rich protein-like(LOC105800272)	coding protein	psRNATarget
XM_012637355.1	ncRNA:24   CCACGUCACGCCACGCAAAUCGAA   1   **||-||||||||||||||||=|| targets:1177   AUUG-AGUGCGGUGCGUUUAGUUU   1199 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii myosin-binding protein 1 (LOC105804661), transcript variant X1, mRNA	myosin-binding protein 1(LOC105804661)	coding protein	psRNATarget
XM_012630513.1	ncRNA:24   CCACGUCACGCCACGCAAAUCGAA   1   *||||=|*|||||||||||||||| targets:1642   CGUGCGGCGCGGUGCGUUUAGCUU   1665 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii uncharacterized LOC105799786 (LOC105799786), mRNA	uncharacterized LOC105799786(LOC105799786)	coding protein	psRNATarget
XM_012620941.1	ncRNA:24   CCACGUCACGCCACGCAAAUCGAA   1   |||||=|||||||||||||||=|| targets:784   GGUGCGGUGCGGUGCGUUUAGUUU   807 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mucin-1-like (LOC105792387), transcript variant X2, mRNA	mucin-1-like(LOC105792387)	coding protein	psRNATarget
XM_012620940.1	ncRNA:24   CCACGUCACGCCACGCAAAUCGAA   1   |||||=|||||||||||||||=|| targets:784   GGUGCGGUGCGGUGCGUUUAGUUU   807 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii mucin-1-like (LOC105792387), transcript variant X1, mRNA	mucin-1-like(LOC105792387)	coding protein	psRNATarget
XM_012600124.1	ncRNA:24   CCACGUCACGCCACGCAAAUCGAA   1   |||||=|||||||*|||||||||| targets:3075   GGUGCGGUGCGGUACGUUUAGCUU   3098 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii probable receptor protein kinase TMK1 (LOC105777067), transcript variant X2, mRNA	probable receptor protein kinase TMK1(LOC105777067)	coding protein	psRNATarget
XM_012600125.1	ncRNA:24   CCACGUCACGCCACGCAAAUCGAA   1   |||||=|||||||*|||||||||| targets:3081   GGUGCGGUGCGGUACGUUUAGCUU   3104 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii probable receptor protein kinase TMK1 (LOC105777067), transcript variant X4, mRNA	probable receptor protein kinase TMK1(LOC105777067)	coding protein	psRNATarget