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BaseInfo

ncRNA ID novel_gra_miR461
Species Gossypium raimondii
Class miRNA
Genome position Chr8:9804850-9804902 [-]
Reference genome Graimondii2_0
Source SRR616257
Length 21
Mature sequence(if miRNA) 33 - UUGGUCUGAUUGAGCCGUGCC - 53
Stem-loop(if miRNA) --    UCU    --    C    CAAU
  UUGG   GAUU  GAGC GUGC    A
  ||||   ||||  |||| ||||    U
  AGCC   CUAA  UUUG CAUG    C
GG    --U    AC    U    AAUU
Stem-loop sequence UUGGUCUGAUUGAGCCGUGCCAAUAUCUUAAGUACUGUUUCAAAUCUCCGAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012601820.1
ncRNA:21   CCGUGCCGAGUUAGUCUGGUU   1
  **=||**||||||||||||||
targets:7   AAUACCACUCAAUCAGACCAA   27

3.0 PREDICTED: Gossypium raimondii pentatricopeptide repeat-containing protein At5g16860 (LOC105778175), mRNA pentatricopeptide repeat-containing protein At5g16860(LOC105778175) coding protein psRNATarget