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BaseInfo

ncRNA ID novel_gra_miR450
Species Gossypium raimondii
Class miRNA
Genome position Chr8:44489906-44490015 [-]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 1 - GACCUUGUCUAGGACAGUGGCAUC - 24
Stem-loop(if miRNA) --- A    -    A      U  CA  GA      U     C      -GACC     
   G CCAC GUCU GGACGA GG  UC  UAUAUG GAUUA GUGUAA     AUGUCU
   | |||| |||| |||||| ||  ||  |||||| ||||| ||||||     |||||A
   C GGUG CAGG UCUGUU CC  AG  AUAUGC UUAGU UAUGUU     UACAGG
CUA -    A    A      -  --  -A      -     U      ACGAU     
Stem-loop sequence GACCACGUCUAGGACGAUGGCAUCGAUAUAUGUGAUUACGUGUAAGACCAUGUCUAGGACAUUAGCAUUGUAUUUGAUUCGUAUAAGACCUUGUCUAGGACAGUGGCAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012584719.1
ncRNA:24   CUACGGUG-ACAGGAUCUGUUCCAG   1
  **||=*||-||||||||||||||||
targets:4632   UCUGUAACAUGUCCUAGACAAGGUC   4656

3.0 PREDICTED: Gossypium raimondii uncharacterized LOC105765549 (LOC105765549), mRNA uncharacterized LOC105765549(LOC105765549) coding protein psRNATarget