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BaseInfo

ncRNA ID	novel_gra_miR445
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr7:43001708-43001773 [+]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	1 - AAUUUUGAGGAUUCGAAAUGUUGC - 24
Stem-loop(if miRNA)	-A    UG    UU    A   UG    CUAA   AUUU  AGGA  CGAA UGU  CACU    C   ||||  ||||  |||| |||  ||||    U   UAAA  UUCU  GCUU ACA  GUGA    U AA    GU    UU    A   GU    AACA
Stem-loop sequence	AAUUUUGAGGAUUCGAAAUGUUGCACUCUAACUUACAAAGUGUGACAAUUCGUUUCUUUGAAAUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012604003.1	ncRNA:24   CGUUGUAAAGCUUAGGAGUUUUAA   1   *|*||=|*|||||||||||||||| targets:8   UCCACGUGUCGAAUCCUCAAAAUU   31 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii protein THYLAKOID FORMATION1, chloroplastic (LOC105779971), mRNA	protein THYLAKOID FORMATION1, chloroplastic(LOC105779971)	coding protein	psRNATarget
XM_012593508.1	ncRNA:24   CGUUGUAAAGCUUAGGAGUUUUAA   1   *=||-|||||||||=||||||||* targets:258   UUAA-AUUUCGAAUUCUCAAAAUC   280 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii lysophospholipid acyltransferase 1-like (LOC105772187), transcript variant X3, mRNA	lysophospholipid acyltransferase 1-like(LOC105772187)	coding protein	psRNATarget
XM_012593506.1	ncRNA:24   CGUUGUAAAGCUUAGGAGUUUUAA   1   *=||-|||||||||=||||||||* targets:256   UUAA-AUUUCGAAUUCUCAAAAUC   278 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii lysophospholipid acyltransferase 1-like (LOC105772187), transcript variant X1, mRNA	lysophospholipid acyltransferase 1-like(LOC105772187)	coding protein	psRNATarget