Search result

BaseInfo

ncRNA ID	novel_gra_miR444
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr7:5099167-5099265 [+]
Reference genome	Graimondii2_0
Source	SRR616257
Length	23
Mature sequence(if miRNA)	1 - UAGCCAAGAAUGACUUGCCUGCU - 23
Stem-loop(if miRNA)	---         A     U     C   U  UUU   A A   -      AAA    UAGCCAAGA UGACU GCCUG UGC CC   CAA G GGU UUCAAA   U    ||||||||| ||||| ||||| ||| ||   ||| | ||| ||||||    AUCGGUUCU ACUGA CGGAC AUG GG   GUU C CCA GAGUUU   U UCA         -     -     C   -  -UU   C -   A      CUU
Stem-loop sequence	UAGCCAAGAAUGACUUGCCUGCUGCUCCUUUCAAAGAGGUUUCAAAAAAUUUUCUUUGAGAACCCCUUGUUGGGUACCAGGCAGUCAUCUUGGCUAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012629760.1	ncRNA:23   UCGUCCGUUCAGUAAGAACCGAU   1   *|=|||||||||||*|||||||| targets:1862   CGUAGGCAAGUCAUCCUUGGCUA   1884 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii ERAD-associated E3 ubiquitin-protein ligase HRD1B-like (LOC105799293), transcript variant X2, mRNA	ERAD-associated E3 ubiquitin-protein ligase HRD1B-like(LOC105799293)	coding protein	psRNATarget
XM_012619988.1	ncRNA:23   UCGUCCGUUCAGUAAGAACCGAU   1   **|||||||*||||||||||||* targets:1120   CUCAGGCAAUUCAUUCUUGGCUU   1142 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-4-like (LOC105791770), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-4-like(LOC105791770)	coding protein	psRNATarget
XM_012619990.1	ncRNA:23   UCGUCCGUUCAGUAAGAACCGAU   1   **|||||||*||||||||||||* targets:1133   CUCAGGCAAUUCAUUCUUGGCUU   1155 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-4-like (LOC105791770), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-4-like(LOC105791770)	coding protein	psRNATarget
XM_012619989.1	ncRNA:23   UCGUCCGUUCAGUAAGAACCGAU   1   **|||||||*||||||||||||* targets:1138   CUCAGGCAAUUCAUUCUUGGCUU   1160 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-4-like (LOC105791770), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-4-like(LOC105791770)	coding protein	psRNATarget
XM_012618249.1	ncRNA:23   UCGUCCGUUCAGUAAGAACCGAU   1   **|||||||*||||||||||||* targets:1220   CUCAGGCAAAUCAUUCUUGGCUU   1242 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-7-like (LOC105790577), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-7-like(LOC105790577)	coding protein	psRNATarget
XM_012618250.1	ncRNA:23   UCGUCCGUUCAGUAAGAACCGAU   1   **|||||||*||||||||||||* targets:1220   CUCAGGCAAAUCAUUCUUGGCUU   1242 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-7-like (LOC105790577), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-7-like(LOC105790577)	coding protein	psRNATarget
XM_012611488.1	ncRNA:23   UCGUCCGUUCAGUAAGAACCGAU   1   =*|||||||*||||||||||||* targets:1294   GACAGGCAAAUCAUUCUUGGCUU   1316 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-1-like (LOC105785404), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-1-like(LOC105785404)	coding protein	psRNATarget
XM_012611486.1	ncRNA:23   UCGUCCGUUCAGUAAGAACCGAU   1   =*|||||||*||||||||||||* targets:1328   GACAGGCAAAUCAUUCUUGGCUU   1350 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-1-like (LOC105785404), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-1-like(LOC105785404)	coding protein	psRNATarget
XM_012611485.1	ncRNA:23   UCGUCCGUUCAGUAAGAACCGAU   1   =*|||||||*||||||||||||* targets:1402   GACAGGCAAAUCAUUCUUGGCUU   1424 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-1-like (LOC105785404), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-1-like(LOC105785404)	coding protein	psRNATarget
XM_012611487.1	ncRNA:23   UCGUCCGUUCAGUAAGAACCGAU   1   =*|||||||*||||||||||||* targets:1344   GACAGGCAAAUCAUUCUUGGCUU   1366 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-1-like (LOC105785404), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-1-like(LOC105785404)	coding protein	psRNATarget
XM_012579564.1	ncRNA:23   UCG-UCCGUUCAGUAAGAACCGAU   1   *||-||||||*||||||||||||* targets:1247   UGCUAGGCAAAUCAUUCUUGGCUC   1270 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-10-like (LOC105761685), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-10-like(LOC105761685)	coding protein	psRNATarget
XM_012612665.1	ncRNA:23   UCG-UCCGUUCAGUAAGAACCGAU   1   *||-||||||*||||||||||||* targets:1343   UGCUAGGCAAAUCAUUCUUGGCUC   1366 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-10-like (LOC105786289), mRNA	nuclear transcription factor Y subunit A-10-like(LOC105786289)	coding protein	psRNATarget
XM_012616991.1	ncRNA:23   UCGUCCGUUCAGUAAGAACCGAU   1   =*|=|||||*||||||||||||* targets:868   GACGGGCAAAUCAUUCUUGGCUU   890 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-7-like (LOC105789621), partial mRNA	nuclear transcription factor Y subunit A-7-like(LOC105789621)	coding protein	psRNATarget