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BaseInfo

ncRNA ID novel_gra_miR441
Species Gossypium raimondii
Class miRNA
Genome position Chr7:32968021-32968236 [+]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 1 - GCUAAAGAUCGAGCAUUAGCGGUG - 24
Stem-loop(if miRNA) --          -   C        UG  CCUAG               --AA                     GG      C    AAAAAACCUAAGCAU   GACAUCGUU
  GCUAAAGAUC GAG AUUAGCGG  CU     GAAAGCGCCACUAAA    UGAGCAUUAGCGGUGUUUUUU  AAAAAC CCGC               AAC         U
  |||||||||| ||| ||||||||  ||     |||||||||||||||    |||||||||||||||||||||  |||||| ||||               |||
  CGAUUUCUAG CUC UAAUCGCC  GA     UUUUUGCGGUGAUUU    ACUCGUAAUCGCCGCGAAAAA  UUUUUG GGCG               AGA         U
GG          A   A        GU  AAAAA               CUAG                     AA      C    ---------AUUUCU   CUUUCCAUC
Stem-loop sequence GCUAAAGAUCGAGCAUUAGCGGUGCUCCUAGGAAAGCGCCACUAAAAAUGAGCAUUAGCGGUGUUUUUUGGAAAAACCCCGCAAAAAACCUAAGCAUAACGACAUCGUUUUCUACCUUUCAGAUCUUUAGCGGCGUUUUUAAAAAAAGCGCCGCUAAUGCUCAGAUCUUUAGUGGCGUUUUUAAAAAAGUGCCGCUAAUACUCAGAUCUUUAGCGG