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BaseInfo

ncRNA ID novel_gra_miR436
Species Gossypium raimondii
Class miRNA
Genome position Chr9:44668948-44669012 [-]
Reference genome Graimondii2_0
Source SRR616255
Length 25
Mature sequence(if miRNA) 41 - CUAAAGAACAUGACCUUUAGCGGCU - 65
Stem-loop(if miRNA) --                        UC   A
  CUAAAGAACAUGACCUUUAGCGGC  UUU C
  ||||||||||||||||||||||||  ||| C
  GAUUUCUUGUACUGGAAAUCGCCG  AAA C
GG                        CA   A
Stem-loop sequence CUAAAGAACAUGACCUUUAGCGGCUCUUUACCCAAAAACGCCGCUAAAGGUCAUGUUCUUUAGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012619119.1
ncRNA:25   UCG--GCGAUUUCCAGUACAAGAAAUC   1
  |||--||||||=|||||||||||||||
targets:1142   AGCACCGCUAAGGGUCAUGUUCUUUAG   1168

1.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619119.1
ncRNA:25   UC-GGCGAUUUCCAGUACAAGAAAUC   1
  ||-|||||||||*|||||||||||||
targets:1058   AGUCCGCUAAAGAUCAUGUUCUUUAG   1083

1.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619119.1
ncRNA:25   UCGGCGAUUUCCAGUACAAGAAAUC   1
  *|=||||*|||||||||||||||||
targets:1230   CGUCGCUUAAGGUCAUGUUCUUUAG   1254

1.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619119.1
ncRNA:25   UCGGCGAUUUCCAGUACAAGAAAUC   1
  *|=||||*|||||||||||||||||
targets:1316   CGUCGCUUAAGGUCAUGUUCUUUAG   1340

1.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619118.1
ncRNA:25   UCG--GCGAUUUCCAGUACAAGAAAUC   1
  |||--||||||=|||||||||||||||
targets:1144   AGCACCGCUAAGGGUCAUGUUCUUUAG   1170

1.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619118.1
ncRNA:25   UC-GGCGAUUUCCAGUACAAGAAAUC   1
  ||-|||||||||*|||||||||||||
targets:1060   AGUCCGCUAAAGAUCAUGUUCUUUAG   1085

1.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619118.1
ncRNA:25   UCGGCGAUUUCCAGUACAAGAAAUC   1
  *|=||||*|||||||||||||||||
targets:1232   CGUCGCUUAAGGUCAUGUUCUUUAG   1256

1.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619118.1
ncRNA:25   UCGGCGAUUUCCAGUACAAGAAAUC   1
  *|=||||*|||||||||||||||||
targets:1318   CGUCGCUUAAGGUCAUGUUCUUUAG   1342

1.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619117.1
ncRNA:25   UCG--GCGAUUUCCAGUACAAGAAAUC   1
  |||--||||||=|||||||||||||||
targets:1315   AGCACCGCUAAGGGUCAUGUUCUUUAG   1341

1.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619117.1
ncRNA:25   UC-GGCGAUUUCCAGUACAAGAAAUC   1
  ||-|||||||||*|||||||||||||
targets:1231   AGUCCGCUAAAGAUCAUGUUCUUUAG   1256

1.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619117.1
ncRNA:25   UCGGCGAUUUCCAGUACAAGAAAUC   1
  *|=||||*|||||||||||||||||
targets:1403   CGUCGCUUAAGGUCAUGUUCUUUAG   1427

1.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619117.1
ncRNA:25   UCGGCGAUUUCCAGUACAAGAAAUC   1
  *|=||||*|||||||||||||||||
targets:1489   CGUCGCUUAAGGUCAUGUUCUUUAG   1513

1.0 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619119.1
ncRNA:25   UCG--GCGAUUUCCAGUACAAGAAAUC   1
  |||--|||||||||||*||||||||||
targets:1185   AGCACCGCUAAAGGUCUUGUUCUUUAG   1211

1.5 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619118.1
ncRNA:25   UCG--GCGAUUUCCAGUACAAGAAAUC   1
  |||--|||||||||||*||||||||||
targets:1187   AGCACCGCUAAAGGUCUUGUUCUUUAG   1213

1.5 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619117.1
ncRNA:25   UCG--GCGAUUUCCAGUACAAGAAAUC   1
  |||--|||||||||||*||||||||||
targets:1358   AGCACCGCUAAAGGUCUUGUUCUUUAG   1384

1.5 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619119.1
ncRNA:25   UCGGCGAUUUCCAGUACAAGAAAUC   1
  *|=||||*|||||||||||=|||||
targets:1273   CGUCGCUUAAGGUCAUGUUUUUUAG   1297

2.5 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619118.1
ncRNA:25   UCGGCGAUUUCCAGUACAAGAAAUC   1
  *|=||||*|||||||||||=|||||
targets:1275   CGUCGCUUAAGGUCAUGUUUUUUAG   1299

2.5 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
XM_012619117.1
ncRNA:25   UCGGCGAUUUCCAGUACAAGAAAUC   1
  *|=||||*|||||||||||=|||||
targets:1446   CGUCGCUUAAGGUCAUGUUUUUUAG   1470

2.5 PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA mRNA cap guanine-N7 methyltransferase-like(LOC105791167) coding protein psRNATarget
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