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BaseInfo

ncRNA ID	novel_gra_miR435
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr7:14409931-14410015 [+]
Reference genome	Graimondii2_0
Source	SRR616257
Length	22
Mature sequence(if miRNA)	1 - CUGCCUGGCUCCCUGCAUGCCA - 22
Stem-loop(if miRNA)	--    C       -   C          U  A  CU     AA   CUGC UGGCUCC CUG AUGCCAACUA GG UG  GUCAA  A   |||| ||||||| ||| |||||||||| || ||  |||||  U   GACG ACUGAGG GAC UACGGUUGAU CC AU  CGGUU  G UG    A       A   -          -  -  CC     AG
Stem-loop sequence	CUGCCUGGCUCCCUGCAUGCCAACUAUGGAUGCUGUCAAAAAUGGAUUGGCCCUACCUAGUUGGCAUCAGAGGAGUCAAGCAGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012596671.1	ncRNA:22   ACCGUACGUCCCUCGGUCCGUC   1   |||||||||||||||||||||* targets:1527   UGGCAUGCAGGGAGCCAGGCAA   1548 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii auxin response factor 17 (LOC105774251), transcript variant X2, mRNA	auxin response factor 17(LOC105774251)	coding protein	psRNATarget
XM_012596670.1	ncRNA:22   ACCGUACGUCCCUCGGUCCGUC   1   |||||||||||||||||||||* targets:1527   UGGCAUGCAGGGAGCCAGGCAA   1548 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii auxin response factor 17 (LOC105774251), transcript variant X1, mRNA	auxin response factor 17(LOC105774251)	coding protein	psRNATarget
XM_012596672.1	ncRNA:22   ACCGUACGUCCCUCGGUCCGUC   1   |||||||||||||||||||||* targets:1529   UGGCAUGCAGGGAGCCAGGCAA   1550 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii auxin response factor 17 (LOC105774251), transcript variant X3, mRNA	auxin response factor 17(LOC105774251)	coding protein	psRNATarget
XM_012591788.1	ncRNA:22   ACCGUACGUCCCUCGGUCCGUC   1   |||||||||||||||||||||* targets:1550   UGGCAUGCAGGGAGCCAGGCAA   1571 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii auxin response factor 17-like (LOC105770543), mRNA	auxin response factor 17-like(LOC105770543)	coding protein	psRNATarget
XM_012630504.1	ncRNA:22   ACCGUACGUCCCUCGGUCCGUC   1   |||||||||||||||||||||* targets:1359   UGGCAUGCAGGGAGCCAGGCAU   1380 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii auxin response factor 18-like (LOC105799779), transcript variant X1, mRNA	auxin response factor 18-like(LOC105799779)	coding protein	psRNATarget
XM_012630506.1	ncRNA:22   ACCGUACGUCCCUCGGUCCGUC   1   |||||||||||||||||||||* targets:2352   UGGCAUGCAGGGAGCCAGGCAU   2373 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii auxin response factor 18-like (LOC105799779), transcript variant X2, mRNA	auxin response factor 18-like(LOC105799779)	coding protein	psRNATarget
XM_012630518.1	ncRNA:22   ACCGUACGUCCCUCGGUCCGUC   1   ||||||*||||||||||||||* targets:2022   UGGCAUACAGGGAGCCAGGCAU   2043 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii putative serine/threonine-protein kinase (LOC105799789), transcript variant X2, mRNA	putative serine/threonine-protein kinase(LOC105799789)	coding protein	psRNATarget
XM_012630517.1	ncRNA:22   ACCGUACGUCCCUCGGUCCGUC   1   ||||||*||||||||||||||* targets:2069   UGGCAUACAGGGAGCCAGGCAU   2090 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii putative serine/threonine-protein kinase (LOC105799789), transcript variant X1, mRNA	putative serine/threonine-protein kinase(LOC105799789)	coding protein	psRNATarget
XM_012616064.1	ncRNA:22   ACCGUACGUCCCUCGGUCCGUC   1   *|||||*||||||||||||||* targets:1559   AGGCAUACAGGGAGCCAGGCAU   1580 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii auxin response factor 10-like (LOC105788951), mRNA	auxin response factor 10-like(LOC105788951)	coding protein	psRNATarget
XM_012604962.1	ncRNA:22   ACCGUACGUCCCUCGGUCCGUC   1   *|||||*||||||||||||||* targets:1704   AGGCAUACAGGGAGCCAGGCAU   1725 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii auxin response factor 18-like (LOC105780565), mRNA	auxin response factor 18-like(LOC105780565)	coding protein	psRNATarget
XM_012599794.1	ncRNA:22   ACCGUACGUCCCUCGGUCCGUC   1   *|||||*||||||||||||||* targets:1663   AGGCAUACAGGGAGCCAGGCAU   1684 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii auxin response factor 18-like (LOC105776854), transcript variant X1, mRNA	auxin response factor 18-like(LOC105776854)	coding protein	psRNATarget
XM_012588143.1	ncRNA:22   ACCGUACGUCCCUCGGUCCGUC   1   *|||||*||||||||||||||* targets:2282   AGGCAUACAGGGAGCCAGGCAU   2303 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii auxin response factor 18-like (LOC105768286), transcript variant X2, mRNA	auxin response factor 18-like(LOC105768286)	coding protein	psRNATarget
XM_012588142.1	ncRNA:22   ACCGUACGUCCCUCGGUCCGUC   1   *|||||*||||||||||||||* targets:2278   AGGCAUACAGGGAGCCAGGCAU   2299 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii auxin response factor 18-like (LOC105768286), transcript variant X1, mRNA	auxin response factor 18-like(LOC105768286)	coding protein	psRNATarget
XM_012609152.1	ncRNA:22   ACCGUACGUCCCUCGGUCCGUC   1   *||*||*||||||||||||||* targets:1420   AGGGAUACAGGGAGCCAGGCAA   1441 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii auxin response factor 18-like (LOC105783599), mRNA	auxin response factor 18-like(LOC105783599)	coding protein	psRNATarget