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BaseInfo

ncRNA ID novel_gra_miR426
Species Gossypium raimondii
Class miRNA
Genome position Chr7:32285701-32285844 [-]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 121 - GUGAUCUCGAAUCACUGUUUCUGA - 144
Stem-loop(if miRNA) --   A       -        U     ACCA  G     UA          AAAUCCGAAUA  U    ---UA  AA
  GUG UCUCGAA UCACUGUU CUGAC    CU AAAAU  GGCUGUUACA           UG UGCC     UC  C
  ||| ||||||| |||||||| |||||    || |||||  ||||||||||           || ||||     ||
  CAC AGGGCUU GGUGACAA GGCUG    GG UUUUA  CCGACAAUGU           AC ACGG     AG  U
AA   C       U        -     AUCC  G     GC          ---------AA  U    UACUG  CA
Stem-loop sequence GUGAUCUCGAAUCACUGUUUCUGACACCACUGAAAAUUAGGCUGUUACAAAAUCCGAAUAUGUUGCCUAUCAACUACGAGUCAUGGCAUCAAAUGUAACAGCCCGAUUUUGGGCCUAGUCGGAACAGUGGUUUCGGGACCACAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012623602.1
ncRNA:24   AGUCUUUGUCACUAAGCUCUAGUG   1
  ||=|||||||||||||||||||||
targets:582   UCGGAAACAGUGAUUCGAGAUCAC   605

0.0 PREDICTED: Gossypium raimondii uncharacterized LOC105794432 (LOC105794432), transcript variant X2, mRNA uncharacterized LOC105794432(LOC105794432) coding protein psRNATarget