ncRNA ID | ath-miR771 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr3:19659301-19659413 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 81 - UGAGCCUCUGUGGUAGCCCUCA - 102 |
Stem-loop(if miRNA) |
--UAA     U       C    U  U        -CA   AU   AAUAGAGUGCAU      AUUCG CAUGAGC UCUG GG AGCCCUCA   AUG  CUC            G      ||||| ||||||| |||| || ||||||||   |||  |||            C      UAAGC GUACUUG GGAC CC UCGGGAGU   UGC  AGA            C GAUUG     U       U    U  -        AGA   --   AAUGUUCUAGCA |
Stem-loop sequence | UAAAUUCGUCAUGAGCCUCUGUGGUAGCCCUCACAAUGAUCUCAAUAGAGUGCAUGCCACGAUCUUGUAAAGACGUAGAUGAGGGCUCCUCAGGUGUUCAUGUCGAAUGUUAG |
1 | PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006). |
2 | PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007). |
3 | PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006). |