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BaseInfo

ncRNA ID ath-miR771
Species Arabidopsis thaliana
Class miRNA
Genome position chr3:19659301-19659413 [-]
Reference genome TAIR10
Source miRBase
Length 22
Mature sequence(if miRNA) 81 - UGAGCCUCUGUGGUAGCCCUCA - 102
Stem-loop(if miRNA) --UAA     U       C    U  U        -CA   AU   AAUAGAGUGCAU
     AUUCG CAUGAGC UCUG GG AGCCCUCA   AUG  CUC            G
     ||||| ||||||| |||| || ||||||||   |||  |||            C
     UAAGC GUACUUG GGAC CC UCGGGAGU   UGC  AGA            C
GAUUG     U       U    U  -        AGA   --   AAUGUUCUAGCA
Stem-loop sequence UAAAUUCGUCAUGAGCCUCUGUGGUAGCCCUCACAAUGAUCUCAAUAGAGUGCAUGCCACGAUCUUGUAAAGACGUAGAUGAGGGCUCCUCAGGUGUUCAUGUCGAAUGUUAG

Reference

1 PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant";
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
Genome Res. 16:1276-1288(2006).
2 PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes";
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC;
PLoS One. 2:e219(2007).
3 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).