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BaseInfo

ncRNA ID novel_gra_miR424
Species Gossypium raimondii
Class miRNA
Genome position Chr7:41829836-41829902 [-]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 44 - GCUAAUGGUCUUGGUCUUUAGCGG - 67
Stem-loop(if miRNA) --     U GU UU    U            GU
  GCUAA G  C  GGUC UUAGCGGCGUUU  U
  ||||| |  |  |||| ||||||||||||  G
  CGAUU C  G  CUAG AAUCGCCGCGAA  G
GG     U UG UU    U            AA
Stem-loop sequence GCUAAUGGUCUUGGUCUUUAGCGGCGUUUGUUGGAAAAGCGCCGCUAAUGAUCUUGGUCUUUAGCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012627970.1
ncRNA:24   GGCGAUUUCUGGUUCUGGUAAUCG   1
  **|=||*||||||||||||||||*
targets:519   GAGUUACAGACCAAGACCAUUAGG   542

2.0 PREDICTED: Gossypium raimondii transcription factor TGA6-like (LOC105798073), mRNA transcription factor TGA6-like(LOC105798073) coding protein psRNATarget