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BaseInfo

ncRNA ID	novel_gra_miR423
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr7:45425796-45425985 [-]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	167 - AAAGGUCCUGAUCUUUAGCGGCGU - 190
Stem-loop(if miRNA)	-A    U  -U --              -------  GUGGAAAAAGCGCCGCUAAAGGUCCUGGUCUUUAGCGGCGUUUGUGGGAAAAGCGGCGCUAA   AAGG CC  G  AUCUUUAGCGGCGU       UU                                                              A   |||| ||  |  ||||||||||||||       ||                                                              G   UUUC GG  C  GAAAUCGCCGCGAA       UU                                                              G GA    U  UU UG              AAAGGUG  UGCGGCGAUUUCUGGUUCUGGAAAUCGCCGCGAAAAUGGUGUUUGCGGCGAUUUCUGGUUCU
Stem-loop sequence	AAAGGUCCUGAUCUUUAGCGGCGUUUGUGGAAAAAGCGCCGCUAAAGGUCCUGGUCUUUAGCGGCGUUUGUGGGAAAAGCGGCGCUAAAGGUCUUGGUCUUUAGCGGCGUUUGUGGUAAAAGCGCCGCUAAAGGUCUUGGUCUUUAGCGGCGUUUGUGGAAAAAGCGCCGCUAAAGGUCUUGGUCUUUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012588315.1	ncRNA:24   UGCGGCGAUUUCUAGUCCUGGAAA   1   |||||||||*|||*|||||||||| targets:1204   ACGCCGCUAUAGAACAGGACCUUU   1227 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105768408 (LOC105768408), transcript variant X3, mRNA	uncharacterized LOC105768408(LOC105768408)	coding protein	psRNATarget
XM_012588314.1	ncRNA:24   UGCGGCGAUUUCUAGUCCUGGAAA   1   |||||||||*|||*|||||||||| targets:1390   ACGCCGCUAUAGAACAGGACCUUU   1413 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105768408 (LOC105768408), transcript variant X2, mRNA	uncharacterized LOC105768408(LOC105768408)	coding protein	psRNATarget
XM_012588313.1	ncRNA:24   UGCGGCGAUUUCUAGUCCUGGAAA   1   |||||||||*|||*|||||||||| targets:1474   ACGCCGCUAUAGAACAGGACCUUU   1497 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105768408 (LOC105768408), transcript variant X1, mRNA	uncharacterized LOC105768408(LOC105768408)	coding protein	psRNATarget