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BaseInfo

ncRNA ID novel_gra_miR422
Species Gossypium raimondii
Class miRNA
Genome position Chr9:51019304-51019376 [-]
Reference genome Graimondii2_0
Source SRR616255;SRR616257
Length 21
Mature sequence(if miRNA) 1 - AGGAGGUGAUGAUUUUUGAAG - 21
Stem-loop(if miRNA) --            C         UUAAUUCUU   A   G
  UCAGAAAUCAUC CUUCCUUGC         GGU UGA U
  |||||||||||| |||||||||         ||| |||
  AGUUUUUAGUAG GGAGGAACG         UUA ACU A
GA            U         ---------   C   A
Stem-loop sequence UCAGAAAUCAUCCCUUCCUUGCUUAAUUCUUGGUAUGAGUAAUCACAUUGCAAGGAGGUGAUGAUUUUUGAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012604901.1
ncRNA:21   GAAGUUUUUAGUAGUGGAGGA   1
  ***||||||||||||||*|||
targets:829   AAGCAAAAAUCAUCACCACCU   849

2.5 PREDICTED: Gossypium raimondii proline-rich receptor-like protein kinase PERK13 (LOC105780517), mRNA proline-rich receptor-like protein kinase PERK13(LOC105780517) coding protein psRNATarget