Search result

BaseInfo

ncRNA ID	novel_gra_miR412
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr6:30633362-30633426 [+]
Reference genome	Graimondii2_0
Source	SRR616257
Length	25
Mature sequence(if miRNA)	1 - CUAAAGGUCUUGUUCUUUAGCGGCU - 25
Stem-loop(if miRNA)	--      GU UUGU           -     U   CUAAAG  C    UCUUUAGCGGC UUUUU G   ||||||  |    ||||||||||| |||||   GAUUUC  G    GGAAAUCGCCG AAAAA G GC      UG UUAU           U     G
Stem-loop sequence	CUAAAGGUCUUGUUCUUUAGCGGCUUUUUUGGGAAAAAUGCCGCUAAAGGUAUUGGUCUUUAGCG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012588315.1	ncRNA:25   UCGGCGAUUUCUUGUUCUGGAAAUC   1   *|||||||*||||||=||||||||| targets:1205   CGCCGCUAUAGAACAGGACCUUUAG   1229 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105768408 (LOC105768408), transcript variant X3, mRNA	uncharacterized LOC105768408(LOC105768408)	coding protein	psRNATarget
XM_012588314.1	ncRNA:25   UCGGCGAUUUCUUGUUCUGGAAAUC   1   *|||||||*||||||=||||||||| targets:1391   CGCCGCUAUAGAACAGGACCUUUAG   1415 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105768408 (LOC105768408), transcript variant X2, mRNA	uncharacterized LOC105768408(LOC105768408)	coding protein	psRNATarget
XM_012588313.1	ncRNA:25   UCGGCGAUUUCUUGUUCUGGAAAUC   1   *|||||||*||||||=||||||||| targets:1475   CGCCGCUAUAGAACAGGACCUUUAG   1499 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105768408 (LOC105768408), transcript variant X1, mRNA	uncharacterized LOC105768408(LOC105768408)	coding protein	psRNATarget
XM_012589165.1	ncRNA:25   UCGGCGAUUUCUUGUUCUGGAAAUC   1   ||**|=|||||||*||||||||||* targets:703   AGAAGUUAAAGAAAAAGACCUUUAA   727 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii RNA-binding protein 38-like (LOC105768887), transcript variant X4, mRNA	RNA-binding protein 38-like(LOC105768887)	coding protein	psRNATarget