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BaseInfo

ncRNA ID novel_gra_miR407
Species Gossypium raimondii
Class miRNA
Genome position Chr9:58771843-58771908 [-]
Reference genome Graimondii2_0
Source SRR616255
Length 23
Mature sequence(if miRNA) 1 - CUAUAGGUUAGGACCUUUAGCGG - 23
Stem-loop(if miRNA) --    U     AG     U        C   U
  GCUA AGGUC  GACCU UAGCGGCG UUU A
  |||| |||||  ||||| |||||||| ||| C
  CGAU UCCAG  UUGGA AUCGCCGC AAA A
GG    U     GA     U        -   C
Stem-loop sequence GCUAUAGGUCAGGACCUUUAGCGGCGCUUUUACACAAACGCCGCUAUAGGUUAGGACCUUUAGCGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012601792.1
ncRNA:23   GGCGAUUUCCAGGAUUGGAUAUC   1
  *****|||||||||||*||||||
targets:199   AAAAAAAAGGUCCUAAACUAUAG   221

2.5 PREDICTED: Gossypium raimondii ubiquitin domain-containing protein 1 (LOC105778162), mRNA ubiquitin domain-containing protein 1(LOC105778162) coding protein psRNATarget