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BaseInfo

ncRNA ID	novel_gra_miR398
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr6:32088726-32088852 [-]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	1 - UUGAUAUGGCAUUAAACUAUUGAC - 24
Stem-loop(if miRNA)	--AU                      A                UGG          A  UUUG     AUAGUUUGAUGUUAUAUUAGUA UUUCAUCUUGAAUUUA   AUUUUCAUUU GA    A     |||||||||||||||||||||| ||||||||||||||||   |||||||||| ||    U     UAUCAAAUUACGGUAUAGUUGU AAAGUAGAAUUUAGAU   UAAAAGUAGA CU    U CAGU                      A                UCA          A  UUUU
Stem-loop sequence	AUAUAGUUUGAUGUUAUAUUAGUAAUUUCAUCUUGAAUUUAUGGAUUUUCAUUUAGAUUUGAUUUUUUUCAAGAUGAAAAUACUUAGAUUUAAGAUGAAAAUGUUGAUAUGGCAUUAAACUAUUGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012629241.1	ncRNA:24   CAGUUAUCAAAUUACGGUAUAGUU   1   |||||||||||||||||||||||| targets:2620   GUCAAUAGUUUAAUGCCAUAUCAA   2643 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii uncharacterized protein At4g04980-like (LOC105798964), transcript variant X2, mRNA	uncharacterized protein At4g04980-like(LOC105798964)	coding protein	psRNATarget
XM_012629240.1	ncRNA:24   CAGUUAUCAAAUUACGGUAUAGUU   1   |||||||||||||||||||||||| targets:2773   GUCAAUAGUUUAAUGCCAUAUCAA   2796 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii uncharacterized protein At4g04980-like (LOC105798964), transcript variant X1, mRNA	uncharacterized protein At4g04980-like(LOC105798964)	coding protein	psRNATarget
XM_012585330.1	ncRNA:24   CAGUUAUCA-AAUUACGGUAUAGUU   1   **|||||*|-||||||||||||||| targets:1250   UCCAAUAAUGUUAAUGCCAUAUCAA   1274 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii putative zinc finger protein At1g68190 (LOC105766036), transcript variant X2, mRNA	putative zinc finger protein At1g68190(LOC105766036)	coding protein	psRNATarget
XM_012585329.1	ncRNA:24   CAGUUAUCA-AAUUACGGUAUAGUU   1   **|||||*|-||||||||||||||| targets:1252   UCCAAUAAUGUUAAUGCCAUAUCAA   1276 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii putative zinc finger protein At1g68190 (LOC105766036), transcript variant X1, mRNA	putative zinc finger protein At1g68190(LOC105766036)	coding protein	psRNATarget