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BaseInfo

ncRNA ID novel_gra_miR396
Species Gossypium raimondii
Class miRNA
Genome position Chr5:50180422-50180535 [+]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 1 - AGUGUAGUUAGGCUACCACUUAUC - 24
Stem-loop(if miRNA) --    -     -A      C      CACU   -   CU    ---CA        -    U
  AGUG UAGUU  GGCUAC ACUUAU    UUG UCA  UGAU     GAUAAGUG UAGC A
  |||| |||||  |||||| ||||||    ||| |||  ||||     |||||||| ||||
  UCAC AUCGA  UCGAUG UGAAUA    AAC AGU  ACUG     CUAUUCAC AUCG A
AU    C     AA      -      ----   U   AC    UUUCA        C    A
Stem-loop sequence AGUGUAGUUAGGCUACCACUUAUCACUUUGUCACUUGAUCAGAUAAGUGUAGCUAAAGCUACCACUUAUCACUUUGUCACAUGAUCAAAUAAGUGUAGCUAAAGCUACCACUUA