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BaseInfo

ncRNA ID	novel_gra_miR387
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr10:39354541-39354689 [+]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	1 - UAAAGGACAUGAUCUUUAGCGGCG - 24
Stem-loop(if miRNA)	--                   C  C      A        G   CUA               U C  UG   GU   UAAAGGACAUGAUCUUUAG GG GCUUUU UUACAAAC CUG   UAGAACAUGAUCUUU G GG  UUU  A   ||||||||||||||||||| || |||||| |||||||| |||   ||||||||||||||| | ||  |||  A   AUUUCUUGUACUAGAAAUC CC CGAAAA AAUGUUUG GAC   AUCUUGUACUAGAAA C CC  GAA  A CG                   A  A      G        G   UAC               U A  GU   AA
Stem-loop sequence	UAAAGGACAUGAUCUUUAGCGGCGCUUUUAUUACAAACGCUGCUAUAGAACAUGAUCUUUUGCGGUGUUUGUAAAAAAAGUGCCACUAAAGAUCAUGUUCUACAUCAGGGUUUGUAAGAAAAGCACCACUAAAGAUCAUGUUCUUUAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012619119.1	ncRNA:24   GCGGCGAUUUCUAGUACAGGAAAU   1   **||||||||||||||||=||||| targets:1059   GUCCGCUAAAGAUCAUGUUCUUUA   1082 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X3, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619118.1	ncRNA:24   GCGGCGAUUUCUAGUACAGGAAAU   1   **||||||||||||||||=||||| targets:1061   GUCCGCUAAAGAUCAUGUUCUUUA   1084 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X2, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012619117.1	ncRNA:24   GCGGCGAUUUCUAGUACAGGAAAU   1   **||||||||||||||||=||||| targets:1232   GUCCGCUAAAGAUCAUGUUCUUUA   1255 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii mRNA cap guanine-N7 methyltransferase-like (LOC105791167), transcript variant X1, mRNA	mRNA cap guanine-N7 methyltransferase-like(LOC105791167)	coding protein	psRNATarget
XM_012603279.1	ncRNA:24   GCG-----GCGAUUUCUAGUACAGGAAAU   1   |||-----=||*|||||||=||||||||| targets:938   CGCACUGGUGCCAAAGAUCGUGUCCUUUA   966 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105779502 (LOC105779502), mRNA	uncharacterized LOC105779502(LOC105779502)	coding protein	psRNATarget