Search result

BaseInfo

ncRNA ID novel_gra_miR386
Species Gossypium raimondii
Class miRNA
Genome position Chr5:10597764-10597818 [-]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 1 - GUUUGAUUUGGUGUGAUUAGACGU - 24
Stem-loop(if miRNA) --   A     A            AAA A
  GUC GAUCA CACUAAGUCAAA   G C
  ||| ||||| ||||||||||||   |
  CAG UUAGU GUGGUUUAGUUU   C G
UG   A     -            --G U
Stem-loop sequence GUCAGAUCAACACUAAGUCAAAAAAGACGUCGUUUGAUUUGGUGUGAUUAGACGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012604298.1
ncRNA:24   UGCA----GAUUAGUGUGGUUUAGUUUG   1
  *|||----|*|||||||||||||||||=
targets:13   CCGUGGUCCAAAUCACACCAAAUCAAAU   40

2.0 PREDICTED: Gossypium raimondii NADPH:quinone oxidoreductase-like (LOC105780150), transcript variant X5, mRNA NADPH:quinone oxidoreductase-like(LOC105780150) coding protein psRNATarget