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BaseInfo

ncRNA ID	novel_gra_miR379
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr5:51495026-51495164 [-]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	116 - GCUCUGUAACCCUGUUCCGGCGAC - 139
Stem-loop(if miRNA)	--         C       C         U                  A  U  CA     A UGCAAAA   GCUCUGUAA CCUGUUC GGCGACGGA AUGGGUUAGGGGUGUUAC UA UC  UUAUG C       A   ||||||||| ||||||| ||||||||| |||||||||||||||||| || ||  ||||| |   UGAGACAUU GGAUGAG CCGUUGUCU UGCCCAAUCCCCACAAUG AU AG  AGUGC G       A UA         A       A         C                  C  U  AA     - UAAUUAU
Stem-loop sequence	GCUCUGUAACCCUGUUCCGGCGACGGAUAUGGGUUAGGGGUGUUACAUAUUCCAUUAUGACUGCAAAAAAUAUUAAUGCGUGAAAGAUUACGUAACACCCCUAACCCGUCUCUGUUGCCAGAGUAGGAUUACAGAGUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012612495.1	ncRNA:24   CAGCGGCCUUGUCCCAAUGUCUCG   1   *|=|=||||||||||||||=|||| targets:1462   AUUGUCGGAACAGGGUUACGGAGC   1485 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii L-2-hydroxyglutarate dehydrogenase, mitochondrial (LOC105786167), transcript variant X2, mRNA	L-2-hydroxyglutarate dehydrogenase, mitochondrial(LOC105786167)	coding protein	psRNATarget
XM_012612494.1	ncRNA:24   CAGCGGCCUUGUCCCAAUGUCUCG   1   *|=|=||||||||||||||=|||| targets:1500   AUUGUCGGAACAGGGUUACGGAGC   1523 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii L-2-hydroxyglutarate dehydrogenase, mitochondrial (LOC105786167), transcript variant X1, mRNA	L-2-hydroxyglutarate dehydrogenase, mitochondrial(LOC105786167)	coding protein	psRNATarget
XM_012584618.1	ncRNA:24   CAGCGGCCUUGUCCCAAUGUCUCG   1   ***|==||||||||*||||||||| targets:2565   AGGGUUGGAACAGGUUUACAGAGC   2588 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 (LOC105765489), transcript variant X1, mRNA	G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080(LOC105765489)	coding protein	psRNATarget