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BaseInfo

ncRNA ID novel_gra_miR377
Species Gossypium raimondii
Class miRNA
Genome position Chr5:6810599-6810652 [+]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 1 - UUGGCGCCUAUCUCAGAGGCGCCA - 24
Stem-loop(if miRNA) --U       UA       --       A
   UGGCGCC  UCUCAGA  GGCGCCA U
   |||||||  |||||||  |||||||
   ACCGCGG  AGGGUCU  CCGUGGU G
AUU       --       AU       G
Stem-loop sequence UUGGCGCCUAUCUCAGAGGCGCCAAUGGUGGUGCCUAUCUGGGAGGCGCCAUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012632413.1
ncRNA:24   ACCGCGGAGACUCUAUCCGCGGUU   1
  |||||||||||||||||*||||||
targets:234   UGGCGCCUCUGAGAUAGACGCCAA   257

1.5 PREDICTED: Gossypium raimondii uncharacterized LOC105801078 (LOC105801078), mRNA uncharacterized LOC105801078(LOC105801078) coding protein psRNATarget
XM_012632413.1
ncRNA:24   ACCGCGGAGACUCUAUCCGCGGUU   1
  |||||||||||||||||||*|||*
targets:124   UGGCGCCUCUGAGAUAGGCACCAC   147

2.5 PREDICTED: Gossypium raimondii uncharacterized LOC105801078 (LOC105801078), mRNA uncharacterized LOC105801078(LOC105801078) coding protein psRNATarget