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BaseInfo

ncRNA ID	novel_gra_miR376
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr5:59271730-59271842 [-]
Reference genome	Graimondii2_0
Source	SRR616257
Length	21
Mature sequence(if miRNA)	93 - ACUCUCCUUCAAAGGCUUCAU - 113
Stem-loop(if miRNA)	--       UU      C      A  ----   CA       AUG          UUAA   ACUCUCC  CAAAGG UUCAUC GC    CAA  UGUCAUU   UGCAAGAGCU    U   |||||||  |||||| |||||| ||    |||  |||||||   ||||||||||   UGAGAGG  GUUUCC AAGUGG UG    GUU  GCGGUAA   ACGUUCUCGA    U CC       UU      C      G  UUAC   AA       ---          UUAA
Stem-loop sequence	ACUCUCCUUCAAAGGCUUCAUCAGCCAACAUGUCAUUAUGUGCAAGAGCUUUAAUUAAUUAGCUCUUGCAAAUGGCGAAUUGCAUUGUGGGUGAACCCUUUGUUGGAGAGUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012614079.1	ncRNA:21   UACUUCGGAAACUUCCUCUCA   1   *||||||||||||||||||*| targets:1666   CUGAAGCCUUUGAAGGAGACU   1686 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii uncharacterized LOC105787604 (LOC105787604), transcript variant X2, mRNA	uncharacterized LOC105787604(LOC105787604)	coding protein	psRNATarget
XM_012614078.1	ncRNA:21   UACUUCGGAAACUUCCUCUCA   1   *||||||||||||||||||*| targets:1686   CUGAAGCCUUUGAAGGAGACU   1706 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii uncharacterized LOC105787604 (LOC105787604), transcript variant X1, mRNA	uncharacterized LOC105787604(LOC105787604)	coding protein	psRNATarget
XM_012597799.1	ncRNA:21   UACUUCGGAAACUUCCUCUCA   1   |||||||=*|||||||||||| targets:1025   AUGAAGCUGUUGAAGGAGAGU   1045 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii patatin-like protein 1 (LOC105775270), mRNA	patatin-like protein 1(LOC105775270)	coding protein	psRNATarget
XM_012625144.1	ncRNA:21   UACUUCGGAAACUUCCUCUCA   1   |||||||=|||||||||||*| targets:630   AUGAAGCUUUUGAAGGAGAAU   650 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105795501 (LOC105795501), transcript variant X2, mRNA	uncharacterized LOC105795501(LOC105795501)	coding protein	psRNATarget
XM_012625143.1	ncRNA:21   UACUUCGGAAACUUCCUCUCA   1   |||||||=|||||||||||*| targets:630   AUGAAGCUUUUGAAGGAGAAU   650 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105795501 (LOC105795501), transcript variant X1, mRNA	uncharacterized LOC105795501(LOC105795501)	coding protein	psRNATarget
XM_012583010.1	ncRNA:21   UACUUCGGAAACUUCCUCUCA   1   *||||||*||||||||*|||| targets:874   UUGAAGCAUUUGAAGGCGAGU   894 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii UDP-glycosyltransferase 89A2-like (LOC105764444), mRNA	UDP-glycosyltransferase 89A2-like(LOC105764444)	coding protein	psRNATarget