ncRNA ID | novel_gra_miR374 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | Chr5:61612746-61612840 [-] |
Reference genome | Graimondii2_0 |
Source | SRR616257 |
Length | 24 |
Mature sequence(if miRNA) | 72 - AAGGAUUGUAUGAAAUAGUGACGC - 95 |
Stem-loop(if miRNA) |
--    A            GU  CGC    UUAUU   AU    UUUUU   AAGG UUGUAUGAAAUA  GA   UAUA     UGU  CAUU     C   |||| ||||||||||||  ||   ||||     |||  ||||     A   UUCC AACAUACUUUGU  CU   AUAU     ACA  GUAA     U UU    -            AC  ---    UGACU   AC    UUUGA |
Stem-loop sequence | AAGGAUUGUAUGAAAUAGUGACGCUAUAUUAUUUGUAUCAUUUUUUUCAUAGUUUAAUGCAACAUCAGUUAUAUCCAUGUUUCAUACAACCUUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_012601567.1 |
|
2.5 | PREDICTED: Gossypium raimondii reticuline oxidase-like protein (LOC105778019), mRNA | reticuline oxidase-like protein(LOC105778019) | coding protein | psRNATarget | |||||||||
XM_012583014.1 |
|
3.0 | PREDICTED: Gossypium raimondii prolyl endopeptidase-like (LOC105764446), mRNA | prolyl endopeptidase-like(LOC105764446) | coding protein | psRNATarget |