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BaseInfo

ncRNA ID novel_gra_miR374
Species Gossypium raimondii
Class miRNA
Genome position Chr5:61612746-61612840 [-]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 72 - AAGGAUUGUAUGAAAUAGUGACGC - 95
Stem-loop(if miRNA) --    A            GU  CGC    UUAUU   AU    UUUUU
  AAGG UUGUAUGAAAUA  GA   UAUA     UGU  CAUU     C
  |||| ||||||||||||  ||   ||||     |||  ||||     A
  UUCC AACAUACUUUGU  CU   AUAU     ACA  GUAA     U
UU    -            AC  ---    UGACU   AC    UUUGA
Stem-loop sequence AAGGAUUGUAUGAAAUAGUGACGCUAUAUUAUUUGUAUCAUUUUUUUCAUAGUUUAAUGCAACAUCAGUUAUAUCCAUGUUUCAUACAACCUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012601567.1
ncRNA:24   CGCAGUGAUAAAGUAUGUUAGGAA   1
  *=*|||*||||||||||||||=||
targets:36   UUUUCAAUAUUUCAUACAAUCUUU   59

2.5 PREDICTED: Gossypium raimondii reticuline oxidase-like protein (LOC105778019), mRNA reticuline oxidase-like protein(LOC105778019) coding protein psRNATarget
XM_012583014.1
ncRNA:24   CGCAGUGAUAAAGUAUGUUAGGAA   1
  **|***=|=|||||||||||||||
targets:2558   AGGGAUUUGUUUCAUACAAUCCUU   2581

3.0 PREDICTED: Gossypium raimondii prolyl endopeptidase-like (LOC105764446), mRNA prolyl endopeptidase-like(LOC105764446) coding protein psRNATarget