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BaseInfo

ncRNA ID	novel_gra_miR358
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr4:27967951-27968103 [+]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	130 - ACUAAAGGUCUUGAUCUAUAGCGG - 153
Stem-loop(if miRNA)	--    A     UU     A    A   UU GUGGAAA           A     UU  A  A           GU   GCUA AGGUC  GAUCU UAGU GCG  U       AAGCGCCGCUG AGGUC  GA CU UAGCGGCGUUU  G   |||| |||||  ||||| |||| |||  |       ||||||||||| |||||  || || |||||||||||  G   CGAU UCUAG  CUGGA AUCA CGU  A       UUUGCGGCGAU UCUAG  CU GA AUCGCCGCGAA  A GG    A     UU     A    C   GG AAAGGUG           A     UU  G  A           AA
Stem-loop sequence	GCUAAAGGUCUUGAUCUAUAGUAGCGUUUGUGGAAAAAGCGCCGCUGAAGGUCUUGAACUAUAGCGGCGUUUGUGGAAAAAGCGCCGCUAAAGGUCUUGAUCUAUAGCGGCGUUUGUGGAAAAGGUGCCACUAAAGGUCUUGAUCUAUAGCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012588315.1	ncRNA:24   GGCGAUAUCUAGUUCUGGAAAUCA   1   ||||||||||*||=|||||||||| targets:1207   CCGCUAUAGAACAGGACCUUUAGU   1230 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105768408 (LOC105768408), transcript variant X3, mRNA	uncharacterized LOC105768408(LOC105768408)	coding protein	psRNATarget
XM_012588314.1	ncRNA:24   GGCGAUAUCUAGUUCUGGAAAUCA   1   ||||||||||*||=|||||||||| targets:1393   CCGCUAUAGAACAGGACCUUUAGU   1416 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105768408 (LOC105768408), transcript variant X2, mRNA	uncharacterized LOC105768408(LOC105768408)	coding protein	psRNATarget
XM_012588313.1	ncRNA:24   GGCGAUAUCUAGUUCUGGAAAUCA   1   ||||||||||*||=|||||||||| targets:1477   CCGCUAUAGAACAGGACCUUUAGU   1500 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105768408 (LOC105768408), transcript variant X1, mRNA	uncharacterized LOC105768408(LOC105768408)	coding protein	psRNATarget