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BaseInfo

ncRNA ID	novel_gra_miR355
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr4:2183656-2183717 [+]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	39 - AGUAAGCUAAACGUACUGCACUGC - 62
Stem-loop(if miRNA)	--   A      A A    -A    AUAACAU   GGU GCGGUG G UUAG  UACU       G   ||| |||||| | ||||  ||||   UCA CGUCAU C AAUC  AUGA       A CG   -      G A    GA    AAAACAG
Stem-loop sequence	GGUAGCGGUGAGAUUAGAUACUAUAACAUGAGACAAAAAGUAAGCUAAACGUACUGCACUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012600124.1	ncRNA:24   CGUCACGUCAUGCAAAUCGAAUGA   1   ||=||||=|||||||||||||||| targets:3078   GCGGUGCGGUACGUUUAGCUUACU   3101 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii probable receptor protein kinase TMK1 (LOC105777067), transcript variant X2, mRNA	probable receptor protein kinase TMK1(LOC105777067)	coding protein	psRNATarget
XM_012600125.1	ncRNA:24   CGUCACGUCAUGCAAAUCGAAUGA   1   ||=||||=|||||||||||||||| targets:3084   GCGGUGCGGUACGUUUAGCUUACU   3107 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii probable receptor protein kinase TMK1 (LOC105777067), transcript variant X4, mRNA	probable receptor protein kinase TMK1(LOC105777067)	coding protein	psRNATarget
XM_012598065.1	ncRNA:24   CGUCACGUCAUGCAAAUCGAAUGA   1   ||=|*||=|||||||||||||||| targets:682   GCGGCGCGGUACGUUUAGCUUACU   705 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii salicylate/benzoate carboxyl methyltransferase-like (LOC105775554), mRNA	salicylate/benzoate carboxyl methyltransferase-like(LOC105775554)	coding protein	psRNATarget
XM_012602837.1	ncRNA:24   CGUCACGUCAUGCAAAUCGAAUGA   1   **=|||=|||||||||||||||=| targets:2432   UAGGUGUAGUACGUUUAGCUUAUU   2455 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105779069 (LOC105779069), transcript variant X4, mRNA	uncharacterized LOC105779069(LOC105779069)	coding protein	psRNATarget
XM_012602832.1	ncRNA:24   CGUCACGUCAUGCAAAUCGAAUGA   1   **=|||=|||||||||||||||=| targets:2737   UAGGUGUAGUACGUUUAGCUUAUU   2760 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105779069 (LOC105779069), transcript variant X3, mRNA	uncharacterized LOC105779069(LOC105779069)	coding protein	psRNATarget
XM_012602820.1	ncRNA:24   CGUCACGUCAUGCAAAUCGAAUGA   1   **=|||=|||||||||||||||=| targets:3602   UAGGUGUAGUACGUUUAGCUUAUU   3625 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105779069 (LOC105779069), transcript variant X1, mRNA	uncharacterized LOC105779069(LOC105779069)	coding protein	psRNATarget
XM_012602824.1	ncRNA:24   CGUCACGUCAUGCAAAUCGAAUGA   1   **=|||=|||||||||||||||=| targets:3613   UAGGUGUAGUACGUUUAGCUUAUU   3636 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105779069 (LOC105779069), transcript variant X2, mRNA	uncharacterized LOC105779069(LOC105779069)	coding protein	psRNATarget