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BaseInfo

ncRNA ID	novel_gra_miR344
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr4:36817464-36817581 [-]
Reference genome	Graimondii2_0
Source	SRR616257
Length	22
Mature sequence(if miRNA)	1 - AGUCUCCCUCAAACGCUUCCGG - 22
Stem-loop(if miRNA)	--     -     GA         A   AACAUG     A   U AUGA   UGAU     A   GGAAG GUUUG  GGAGAUUGA CAA      CCUUG UGA G    UGA    GAUAU U   ||||| |||||  ||||||||| |||      ||||| ||| |    |||    |||||   CCUUC CAAAC  CCUCUGACU GUU      GGAAC AUU C    AUU    UUAUA A GG     G     UC         C   GGUUAA     -   - -GAA   --UU     U
Stem-loop sequence	GGAAGGUUUGGAGGAGAUUGAACAAAACAUGCCUUGAUGAUGAUGAUGAUGAUGAUAUAUAUAUAUUUUUUAAAGCUUACAAGGAAUUGGUUGCUCAGUCUCCCUCAAACGCUUCCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012599712.1	ncRNA:22   GGCCUUCGCAAACUCCCUCUGA   1   *=**||||||||||*||||||| targets:2792   AUUAAAGCGUUUGAAGGAGACU   2813 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii E3 ubiquitin-protein ligase RKP (LOC105776800), mRNA	E3 ubiquitin-protein ligase RKP(LOC105776800)	coding protein	psRNATarget
XM_012614079.1	ncRNA:22   GGCCUUCGCAAACUCCCUCUGA   1   *|*|||||*|||||*||||||| targets:1665   ACUGAAGCCUUUGAAGGAGACU   1686 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105787604 (LOC105787604), transcript variant X2, mRNA	uncharacterized LOC105787604(LOC105787604)	coding protein	psRNATarget
XM_012614078.1	ncRNA:22   GGCCUUCGCAAACUCCCUCUGA   1   *|*|||||*|||||*||||||| targets:1685   ACUGAAGCCUUUGAAGGAGACU   1706 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105787604 (LOC105787604), transcript variant X1, mRNA	uncharacterized LOC105787604(LOC105787604)	coding protein	psRNATarget
XM_012606136.1	ncRNA:22   GGCCUUCGCAAACUCCCUCUGA   1   **|||||=*||||||||||||* targets:84   GAGGAAGUCUUUGAGGGAGACA   105 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii uncharacterized LOC105781614 (LOC105781614), mRNA	uncharacterized LOC105781614(LOC105781614)	coding protein	psRNATarget