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BaseInfo

ncRNA ID	novel_gra_miR341
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr4:43438394-43438548 [-]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	132 - AAGGGUUAGGAUACGCACCUGGCA - 155
Stem-loop(if miRNA)	--A     UA     CG        A     UGAAAA   U U     GGGU   GUU -- UUGAACUGUUGGGUCGAGUGA    AGGGU  GGAUA  CACCUGGC UCAUU      GGC G GCCGU    AUC   G  G                     C    |||||  |||||  |||||||| |||||      ||| | |||||    |||   |  |    UUCCG  UCUGU  GUGGGCCG GGUAG      UCG C CGGUA    UAG   G  C                     U UUG     GG     AA        -     ---UAG   - -     -AGU   --U GU CGGGUCACUCUCGUGGCUGUG
Stem-loop sequence	AAGGGUUAGGAUACGCACCUGGCAUCAUUUGAAAAGGCUGUGCCGUGGGUAUCGUUGGUUGAACUGUUGGGUCGAGUGACUGUGUCGGUGCUCUCACUGGGCCUGGUGAUUGAAUGGCCGCUGAUGAUGGGCCGGGUGAAUGUCUGGGCCUUGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012622581.1	ncRNA:24   ACGGUCCACGCAUAGGAUUGGGAA   1   |||=|*||||||||=||||||||| targets:1319   UGCUAAGUGCGUAUUCUAACCCUU   1342 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii serine/threonine-protein phosphatase 7 long form homolog (LOC105793737), mRNA	serine/threonine-protein phosphatase 7 long form homolog(LOC105793737)	coding protein	psRNATarget
XM_012593583.1	ncRNA:24   ACGGUCCACGCAUAGGAUUGGGAA   1   ||*||*||||||||||||=||||| targets:624   UGGCAUGUGCGUAUCCUAGCCCUU   647 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii extensin-like (LOC105772282), transcript variant X2, mRNA	extensin-like(LOC105772282)	coding protein	psRNATarget
XM_012593582.1	ncRNA:24   ACGGUCCACGCAUAGGAUUGGGAA   1   ||*||*||||||||||||=||||| targets:634   UGGCAUGUGCGUAUCCUAGCCCUU   657 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii extensin-like (LOC105772282), transcript variant X1, mRNA	extensin-like(LOC105772282)	coding protein	psRNATarget