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BaseInfo

ncRNA ID novel_gra_miR340
Species Gossypium raimondii
Class miRNA
Genome position Chr4:43629570-43629741 [-]
Reference genome Graimondii2_0
Source SRR616257
Length 21
Mature sequence(if miRNA) 1 - AUUGGAGUGAAGGGAGCUCCG - 21
Stem-loop(if miRNA) -  -       GA       AC         AA   C     G U   G  G          G U     UG A    UAAAAAUG    C
 GG GCUCUCU  ACUCCAA  CUAAAGGGA  UGA GGUAG C ACG CU CUAGUUCAUG A GCCCU  G UGCG        GGCU G
 || |||||||  |||||||  |||||||||  ||| ||||| | ||| || |||||||||| | |||||  | ||||        |||| A
 CC CGAGGGA  UGAGGUU  GGUUUUUCU  ACU CCGUU G UGC GA GAUCAAGUAC U UGGGA  C ACGC        UUGG G
G  U       AG       AU         --   U     - U   A  G          G U     GU G    --------    G
Stem-loop sequence GGGCUCUCUGAACUCCAAACCUAAAGGGAAAUGACGGUAGGCUACGGCUGCUAGUUCAUGGAUGCCCUUGGAUGCGUAAAAAUGGGCUCGAGGGGUUCGCAGCUGAGGGUUUGCAUGAACUAGGAGACGUUGUUGCCUUCAUCUUUUUGGUAUUGGAGUGAAGGGAGCUCCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012604446.1
ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1
  =||||||||||||||||||||
targets:765   UGGAGCUCCCUUCACUCCAAU   785

0.0 PREDICTED: Gossypium raimondii transcription factor GAMYB-like (LOC105780237), transcript variant X6, mRNA transcription factor GAMYB-like(LOC105780237) coding protein psRNATarget
XM_012604445.1
ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1
  =||||||||||||||||||||
targets:845   UGGAGCUCCCUUCACUCCAAU   865

0.0 PREDICTED: Gossypium raimondii transcription factor GAMYB-like (LOC105780237), transcript variant X5, mRNA transcription factor GAMYB-like(LOC105780237) coding protein psRNATarget
XM_012604447.1
ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1
  =||||||||||||||||||||
targets:1328   UGGAGCUCCCUUCACUCCAAU   1348

0.0 PREDICTED: Gossypium raimondii transcription factor GAMYB-like (LOC105780237), transcript variant X7, mRNA transcription factor GAMYB-like(LOC105780237) coding protein psRNATarget
XM_012604444.1
ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1
  =||||||||||||||||||||
targets:1326   UGGAGCUCCCUUCACUCCAAU   1346

0.0 PREDICTED: Gossypium raimondii transcription factor GAMYB-like (LOC105780237), transcript variant X4, mRNA transcription factor GAMYB-like(LOC105780237) coding protein psRNATarget
XM_012596193.1
ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1
  =||||||||||||||||||||
targets:1349   UGGAGCUCCCUUCACUCCAAU   1369

0.0 PREDICTED: Gossypium raimondii transcription factor GAMYB-like (LOC105773957), transcript variant X2, mRNA transcription factor GAMYB-like(LOC105773957) coding protein psRNATarget
XM_012596192.1
ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1
  =||||||||||||||||||||
targets:1353   UGGAGCUCCCUUCACUCCAAU   1373

0.0 PREDICTED: Gossypium raimondii transcription factor GAMYB-like (LOC105773957), transcript variant X1, mRNA transcription factor GAMYB-like(LOC105773957) coding protein psRNATarget
XM_012604443.1
ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1
  =||||||||||||||||||||
targets:1262   UGGAGCUCCCUUCACUCCAAU   1282

0.0 PREDICTED: Gossypium raimondii transcription factor GAMYB-like (LOC105780237), transcript variant X3, mRNA transcription factor GAMYB-like(LOC105780237) coding protein psRNATarget
XM_012604440.1
ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1
  =||||||||||||||||||||
targets:1325   UGGAGCUCCCUUCACUCCAAU   1345

0.0 PREDICTED: Gossypium raimondii transcription factor GAMYB-like (LOC105780237), transcript variant X1, mRNA transcription factor GAMYB-like(LOC105780237) coding protein psRNATarget
XM_012604441.1
ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1
  =||||||||||||||||||||
targets:1428   UGGAGCUCCCUUCACUCCAAU   1448

0.0 PREDICTED: Gossypium raimondii transcription factor GAMYB-like (LOC105780237), transcript variant X2, mRNA transcription factor GAMYB-like(LOC105780237) coding protein psRNATarget
XM_012591928.1
ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1
  =||||||||||||||||||||
targets:1313   UGGAGCUCCCUUCACUCCAAU   1333

0.0 PREDICTED: Gossypium raimondii transcription factor GAMYB-like (LOC105770643), transcript variant X3, mRNA transcription factor GAMYB-like(LOC105770643) coding protein psRNATarget
XM_012591929.1
ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1
  =||||||||||||||||||||
targets:1318   UGGAGCUCCCUUCACUCCAAU   1338

0.0 PREDICTED: Gossypium raimondii transcription factor GAMYB-like (LOC105770643), transcript variant X4, mRNA transcription factor GAMYB-like(LOC105770643) coding protein psRNATarget
XM_012591927.1
ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1
  =||||||||||||||||||||
targets:1440   UGGAGCUCCCUUCACUCCAAU   1460

0.0 PREDICTED: Gossypium raimondii transcription factor GAMYB-like (LOC105770643), transcript variant X2, mRNA transcription factor GAMYB-like(LOC105770643) coding protein psRNATarget
XM_012591926.1
ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1
  =||||||||||||||||||||
targets:1455   UGGAGCUCCCUUCACUCCAAU   1475

0.0 PREDICTED: Gossypium raimondii transcription factor GAMYB-like (LOC105770643), transcript variant X1, mRNA transcription factor GAMYB-like(LOC105770643) coding protein psRNATarget
XM_012596194.1
ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1
  =||||||||||||||||||||
targets:1826   UGGAGCUCCCUUCACUCCAAU   1846

0.0 PREDICTED: Gossypium raimondii transcription factor GAMYB-like (LOC105773957), transcript variant X3, mRNA transcription factor GAMYB-like(LOC105773957) coding protein psRNATarget
XM_012612582.1
ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1
  =||||*|||||||||||*|||
targets:661   UGGAGAUCCCUUCACUCGAAU   681

2.5 PREDICTED: Gossypium raimondii carboxyl-terminal-processing peptidase 3, chloroplastic (LOC105786234), transcript variant X2, mRNA carboxyl-terminal-processing peptidase 3, chloroplastic(LOC105786234) coding protein psRNATarget
XM_012612581.1
ncRNA:21   GCCUCGAGGGAAGUGAGGUUA   1
  =||||*|||||||||||*|||
targets:656   UGGAGAUCCCUUCACUCGAAU   676

2.5 PREDICTED: Gossypium raimondii carboxyl-terminal-processing peptidase 3, chloroplastic (LOC105786234), transcript variant X1, mRNA carboxyl-terminal-processing peptidase 3, chloroplastic(LOC105786234) coding protein psRNATarget
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