ncRNA ID | novel_gra_miR332 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | Chr3:42561193-42561295 [+] |
Reference genome | Graimondii2_0 |
Source | SRR616257 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AGGUCCAUUUGUUUGACUGAAAAU - 24 |
Stem-loop(if miRNA) |
--        UU UU G   -       -----G           UAAUA  UAC   AGGUCCAU  G  U ACU GAAAAUG      UUUCUGGAAAA     UC   A   ||||||||  |  | ||| |||||||      |||||||||||     ||   UCUAGGUA  U  G UGA CUUUUAU      AAAGAUCUUUU     AG   A UC        GG UU -   U       AAUUGA           CAUUC  UAA |
Stem-loop sequence | AGGUCCAUUUGUUUGACUGAAAAUGGUUUCUGGAAAAUAAUAUCUACAAAAUGACUUACUUUUCUAGAAAAGUUAAUAUUUUCUAGUGUUUGGAUGGAUCUCU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_012617209.1 |
|
3.0 | PREDICTED: Gossypium raimondii polygalacturonase-like (LOC105789902), mRNA | polygalacturonase-like(LOC105789902) | coding protein | psRNATarget |