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BaseInfo

ncRNA ID novel_gra_miR332
Species Gossypium raimondii
Class miRNA
Genome position Chr3:42561193-42561295 [+]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 1 - AGGUCCAUUUGUUUGACUGAAAAU - 24
Stem-loop(if miRNA) --        UU UU G   -       -----G           UAAUA  UAC
  AGGUCCAU  G  U ACU GAAAAUG      UUUCUGGAAAA     UC   A
  ||||||||  |  | ||| |||||||      |||||||||||     ||
  UCUAGGUA  U  G UGA CUUUUAU      AAAGAUCUUUU     AG   A
UC        GG UU -   U       AAUUGA           CAUUC  UAA
Stem-loop sequence AGGUCCAUUUGUUUGACUGAAAAUGGUUUCUGGAAAAUAAUAUCUACAAAAUGACUUACUUUUCUAGAAAAGUUAAUAUUUUCUAGUGUUUGGAUGGAUCUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012617209.1
ncRNA:24   UAAA---AGUCAGUUUGUUUACCUGGA   1
  |||*---|=|||*=|||||||||||||
targets:1218   AUUACGCUUAGUGGAACAAAUGGACCU   1244

3.0 PREDICTED: Gossypium raimondii polygalacturonase-like (LOC105789902), mRNA polygalacturonase-like(LOC105789902) coding protein psRNATarget