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BaseInfo

ncRNA ID	novel_gra_miR331
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr10:58149639-58149832 [-]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	171 - UUGAAUCUAGUUUCUCUCUUGCUC - 194
Stem-loop(if miRNA)	--U         UU             A    ----         -CUUAU        UCUU      A  A   --      UA  UUCAUAACUCAGCA    UGAAUCUAG  UCUCUCUUGCUCU UUUG    CAUAUUUUC      GAAAUAUG    CAAGAG GU AGG  GAGAUC  GA              A    |||||||||  ||||||||||||| ||||    |||||||||      ||||||||    |||||| || |||  ||||||  ||    ACUUAGAUC  AGAGGGAACGAGA GAAC    GUAUAAAAG      UUUUAUAC    GUUUUC UA UCC  CUCUAG  UC              A AAU         -C             -    UUCG         UAUUCC        -UUU      A  A   UU      UC  AGUUCAACUACUGA
Stem-loop sequence	UUGAAUCUAGUUUCUCUCUUGCUCUAUUUGCAUAUUUUCCUUAUGAAAUAUGUCUUCAAGAGAGUAAGGGAGAUCUAGAUUCAUAACUCAGCAAAAGUCAUCAACUUGACUCUGAUCUCUUCCUAAUACUUUUGUUUCAUAUUUUCCUUAUGAAAAUAUGGCUUCAAGAGAGCAAGGGAGACCUAGAUUCAUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012625213.1	ncRNA:24   CUCGUUCUCUCUUUGAUCUAAGUU   1   ****|||||||||||||||||||* targets:174   AUUAAAGAGAGAAACUAGAUUCAU   197 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii uncharacterized LOC105795531 (LOC105795531), transcript variant X4, mRNA	uncharacterized LOC105795531(LOC105795531)	coding protein	psRNATarget
XM_012625212.1	ncRNA:24   CUCGUUCUCUCUUUGAUCUAAGUU   1   ****|||||||||||||||||||* targets:282   AUUAAAGAGAGAAACUAGAUUCAU   305 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii uncharacterized LOC105795531 (LOC105795531), transcript variant X3, mRNA	uncharacterized LOC105795531(LOC105795531)	coding protein	psRNATarget
XM_012625211.1	ncRNA:24   CUCGUUCUCUCUUUGAUCUAAGUU   1   ****|||||||||||||||||||* targets:282   AUUAAAGAGAGAAACUAGAUUCAU   305 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii uncharacterized LOC105795531 (LOC105795531), transcript variant X2, mRNA	uncharacterized LOC105795531(LOC105795531)	coding protein	psRNATarget
XM_012625210.1	ncRNA:24   CUCGUUCUCUCUUUGAUCUAAGUU   1   ****|||||||||||||||||||* targets:297   AUUAAAGAGAGAAACUAGAUUCAU   320 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii uncharacterized LOC105795531 (LOC105795531), transcript variant X1, mRNA	uncharacterized LOC105795531(LOC105795531)	coding protein	psRNATarget
XM_012609273.1	ncRNA:24   CUCGUUCUCUCUUUGAUCUAAGUU   1   *=*|||||||*|*||||||||||| targets:211   UGUCAAGAGAAACACUAGAUUCAA   234 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii ninja-family protein AFP3 (LOC105783684), mRNA	ninja-family protein AFP3(LOC105783684)	coding protein	psRNATarget