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BaseInfo

ncRNA ID	novel_gra_miR317
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr3:10718609-10718664 [-]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	1 - AAGGCACCUUCUUGAUGCUCUUCC - 24
Stem-loop(if miRNA)	--      -      C    CU      AU   AGGAGC UCGAGG AGGU  GCUUUU  C   |||||| |||||| ||||  ||||||   UUCUCG AGUUCU UCCA  CGGAAA  U CC      U      -    --      GU
Stem-loop sequence	AGGAGCUCGAGGCAGGUCUGCUUUUAUCUUGAAAGGCACCUUCUUGAUGCUCUUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012617594.1	ncRNA:24   CCUUCUCGUAGUUCUUCCACGGAA   1   |||=|||||||||||||||||||| targets:789   GGAGGAGCAUCAAGAAGGUGCCUU   812 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii uncharacterized LOC105790154 (LOC105790154), mRNA	uncharacterized LOC105790154(LOC105790154)	coding protein	psRNATarget
XM_012637125.1	ncRNA:24   CCUUCUCGUAGUUCUUCCACGGAA   1   |||=|||||*|||||||||||||| targets:1168   GGAGGAGCACCAAGAAGGUGCCUU   1191 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii uncharacterized LOC105804486 (LOC105804486), mRNA	uncharacterized LOC105804486(LOC105804486)	coding protein	psRNATarget
XM_012613246.1	ncRNA:24   CCUUCUCGUAGUUCUUCCACGGAA   1   |||=|||||*|||||||||||||| targets:87   GGAGGAGCACCAAGAAGGUGCCUU   110 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii uncharacterized LOC105786765 (LOC105786765), mRNA	uncharacterized LOC105786765(LOC105786765)	coding protein	psRNATarget
XM_012598171.1	ncRNA:24   CCUUCUCGUAGUUCUUCCACGGAA   1   *||=|||||*|||||||||||||| targets:576   AGAGGAGCACCAAGAAGGUGCCUU   599 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii uncharacterized LOC105775683 (LOC105775683), mRNA	uncharacterized LOC105775683(LOC105775683)	coding protein	psRNATarget
XM_012613167.1	ncRNA:24   CCUUCUCGUAGUUCUUCCACGGAA   1   *||=|||||*|||||||||||||| targets:360   AGAGGAGCACCAAGAAGGUGCCUU   383 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii uncharacterized LOC105786661 (LOC105786661), mRNA	uncharacterized LOC105786661(LOC105786661)	coding protein	psRNATarget
XM_012586613.1	ncRNA:24   CCUUCUCGUAGUUCUUCCACGGAA   1   |||||||||||||||||||*|||| targets:105   GGAAGAGCAUCAAGAAGGUUCCUU   128 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii uncharacterized LOC105767090 (LOC105767090), mRNA	uncharacterized LOC105767090(LOC105767090)	coding protein	psRNATarget
XM_012586369.1	ncRNA:24   CCUUCUCGUAGUUCUUCCACGGAA   1   *|||||||||||||||*||||||| targets:243   AGAAGAGCAUCAAGAAAGUGCCUU   266 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii uncharacterized LOC105766802 (LOC105766802), mRNA	uncharacterized LOC105766802(LOC105766802)	coding protein	psRNATarget
XM_012613312.1	ncRNA:24   CCUUCUCGUAGUUCUUCCACGGAA   1   |||=|||=|*|||||||||||||| targets:243   GGAGGAGUACCAAGAAGGUGCCUU   266 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii uncharacterized LOC105786833 (LOC105786833), mRNA	uncharacterized LOC105786833(LOC105786833)	coding protein	psRNATarget
XM_012632438.1	ncRNA:24   CCUUCUCGUAGUUCUUCCACGGAA   1   |||=|||||*=||||||||||||| targets:413   GGAGGAGCACUAAGAAGGUGCCUU   436 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii uncharacterized LOC105801109 (LOC105801109), mRNA	uncharacterized LOC105801109(LOC105801109)	coding protein	psRNATarget
XM_012632658.1	ncRNA:24   CCUUCUCGUAGUUCUUCCACGGAA   1   *||=|||||*=||||||||||||| targets:529   AGAGGAGCACUAAGAAGGUGCCUU   552 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii uncharacterized LOC105801344 (LOC105801344), mRNA	uncharacterized LOC105801344(LOC105801344)	coding protein	psRNATarget
XM_012610994.1	ncRNA:24   CCUUCUCGUAGUUCUUCCACGGAA   1   |||=||*||*|||||||||||||| targets:525   GGAGGAACACCAAGAAGGUGCCUU   548 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii uncharacterized LOC105785063 (LOC105785063), mRNA	uncharacterized LOC105785063(LOC105785063)	coding protein	psRNATarget
XM_012605880.1	ncRNA:24   CCUUCUCGUAGUUCUUCCACGGAA   1   |||=|||||*||=||||||||||| targets:486   GGAGGAGCACCAGGAAGGUGCCUU   509 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105781336 (LOC105781336), mRNA	uncharacterized LOC105781336(LOC105781336)	coding protein	psRNATarget
XM_012599813.1	ncRNA:24   CCUUCUCGUAGUUCUUCCACGGAA   1   |||=|||||*||=||||||||||| targets:656   GGAGGAGCACCAGGAAGGUGCCUU   679 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105776867 (LOC105776867), mRNA	uncharacterized LOC105776867(LOC105776867)	coding protein	psRNATarget
XM_012613220.1	ncRNA:24   CCUUCUCGUAGUUCUUCCACGGAA   1   |||||||||*||||||||*||||| targets:618   GGAAGAGCACCAAGAAGGAGCCUU   641 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105786727 (LOC105786727), mRNA	uncharacterized LOC105786727(LOC105786727)	coding protein	psRNATarget