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BaseInfo

ncRNA ID	novel_gra_miR316
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr3:16706848-16706935 [-]
Reference genome	Graimondii2_0
Source	SRR616257
Length	22
Mature sequence(if miRNA)	67 - UAGCCAAGGAUGACUUGCCUGU - 88
Stem-loop(if miRNA)	--             C       U  CU  --         UC     UAGCCAAGGAUGA UUGCCUG AG  CA  CAAGAAGUU  ACC   ||||||||||||| ||||||| ||  ||  |||||||||  ||A   AUUGGUUCCUAUU AACGGAC UU  GU  GUUCUUUAA  UGA GA             -       C  AG  UG         UU
Stem-loop sequence	UAGCCAAGGAUGACUUGCCUGUAGCUCACAAGAAGUUUCACCAAGUUUAAUUUCUUGGUUGGAUUCCAGGCAAUUAUCCUUGGUUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012629760.1	ncRNA:22   UGUCCGUUCAGUAGGAACCGAU   1   ==|||||||||||||||||||| targets:1863   GUAGGCAAGUCAUCCUUGGCUA   1884 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii ERAD-associated E3 ubiquitin-protein ligase HRD1B-like (LOC105799293), transcript variant X2, mRNA	ERAD-associated E3 ubiquitin-protein ligase HRD1B-like(LOC105799293)	coding protein	psRNATarget
XM_012609707.1	ncRNA:22   UGUCCGUUCAGUAGGAACCGAU   1   ||*|||||*||||||||||||* targets:1136   ACCGGCAACUCAUCCUUGGCUU   1157 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-7-like (LOC105783980), transcript variant X2, mRNA	nuclear transcription factor Y subunit A-7-like(LOC105783980)	coding protein	psRNATarget
XM_012609709.1	ncRNA:22   UGUCCGUUCAGUAGGAACCGAU   1   ||*|||||*||||||||||||* targets:1137   ACCGGCAACUCAUCCUUGGCUU   1158 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-7-like (LOC105783980), transcript variant X4, mRNA	nuclear transcription factor Y subunit A-7-like(LOC105783980)	coding protein	psRNATarget
XM_012609708.1	ncRNA:22   UGUCCGUUCAGUAGGAACCGAU   1   ||*|||||*||||||||||||* targets:1150   ACCGGCAACUCAUCCUUGGCUU   1171 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-7-like (LOC105783980), transcript variant X3, mRNA	nuclear transcription factor Y subunit A-7-like(LOC105783980)	coding protein	psRNATarget
XM_012609706.1	ncRNA:22   UGUCCGUUCAGUAGGAACCGAU   1   ||*|||||*||||||||||||* targets:1153   ACCGGCAACUCAUCCUUGGCUU   1174 Target Full Sequence	2.0	PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-7-like (LOC105783980), transcript variant X1, mRNA	nuclear transcription factor Y subunit A-7-like(LOC105783980)	coding protein	psRNATarget
XM_012618940.1	ncRNA:22   UGUCCGUUCAGUAGGAACCGAU   1   |||*||*||||||||||||||= targets:1061   ACACGCUAGUCAUCCUUGGCUG   1082 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii uncharacterized LOC105791062 (LOC105791062), mRNA	uncharacterized LOC105791062(LOC105791062)	coding protein	psRNATarget