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BaseInfo

ncRNA ID novel_gra_miR314
Species Gossypium raimondii
Class miRNA
Genome position Chr3:22538906-22538975 [-]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 47 - GUGGAUACCAAGUGUUCAAACGUC - 70
Stem-loop(if miRNA) -- UG -       -      AA    C    C   A
  G  G AUACCAA GUGUUC  ACGU UGUU UAG G
  |  | ||||||| ||||||  |||| |||| |||
  C  C UAUGGUU CGCAGG  UGUA ACGA AUU C
AA GU A       A      GC    -    -   U
Stem-loop sequence GUGGAUACCAAGUGUUCAAACGUCUGUUCUAGAGCUUUAAGCAAUGUCGGGACGCAUUGGUAUACUGCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012617007.1
ncRNA:24   CUGCAAACUUGUGAACCAUAGGUG   1
  ||||*||||=|||||||*||||||
targets:438   GACGCUUGAGCACUUGGCAUCCAC   461

2.5 PREDICTED: Gossypium raimondii uncharacterized LOC105789638 (LOC105789638), mRNA uncharacterized LOC105789638(LOC105789638) coding protein psRNATarget