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BaseInfo

ncRNA ID novel_gra_miR313
Species Gossypium raimondii
Class miRNA
Genome position Chr3:30195169-30195233 [-]
Reference genome Graimondii2_0
Source SRR616257
Length 22
Mature sequence(if miRNA) 1 - UUAAAGGUCUUGGUCUUUAGCG - 22
Stem-loop(if miRNA) --      GU UU GU      C       GU
  CUAAAG  C  G  CUUUAG GGCGUUU  G
  ||||||  |  |  |||||| |||||||  G
  GAUUUC  G  C  GAAAUU CUGCGAA  G
GC      UG UU UG      A       AA
Stem-loop sequence CUAAAGGUCUUGGUCUUUAGCGGCGUUUGUGGGAAAAGCGUCAUUAAAGGUCUUGGUCUUUAGCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012599306.1
ncRNA:22   GCGAUUUCUGGUUCUGGAAAUU   1
  ****||=||||||||||||||=
targets:2180   GAGGAAGGACCAAGACCUUUAG   2201

3.0 PREDICTED: Gossypium raimondii exocyst complex component EXO84B-like (LOC105776577), mRNA exocyst complex component EXO84B-like(LOC105776577) coding protein psRNATarget