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BaseInfo

ncRNA ID novel_gra_miR312
Species Gossypium raimondii
Class miRNA
Genome position Chr2:55022055-55022104 [+]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 1 - AGGCUUGUUUGUUAGGCUUGAGCC - 24
Stem-loop(if miRNA) --     UG   G     C UG   
  AGGCU  UUU UUAGG U  AGCC
  |||||  ||| ||||| |  |||C
  UUUGG  AAA AAUCC A  UCGA
AG     GU   A     - GU   
Stem-loop sequence AGGCUUGUUUGUUAGGCUUGAGCCCAGCUUGACCUAAAAAAUGGGUUUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012611193.1
ncRNA:24   CCGA-GUUCGGAUUGUUUGUUCGGA   1
  *|||-||||||*|||||*|||||||
targets:3377   AGCUUCAAGCCGAACAAUCAAGCCU   3401

2.5 PREDICTED: Gossypium raimondii structural maintenance of chromosomes protein 2-1 (LOC105785233), mRNA structural maintenance of chromosomes protein 2-1(LOC105785233) coding protein psRNATarget