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BaseInfo

ncRNA ID	novel_gra_miR311
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr2:48384079-48384270 [+]
Reference genome	Graimondii2_0
Source	SRR616257
Length	24
Mature sequence(if miRNA)	169 - AAAGGACUAGUUUGCUCUUUGAUC - 192
Stem-loop(if miRNA)	--     A  G   A  A      C           A      CUGCAUAAAAAA       UAU    AUGACAAAAUAACCAAACAAU   ACAUUGCAUGCCACG   UCAAA AG AAA UG UCCUUU UGUUAAAAAUU UCAUCU            AAAAACU   GUCA                     UGC               U   ||||| || ||| || |||||| ||||||||||| ||||||            |||||||   ||||                     |||   AGUUU UC UUU AU AGGAAA ACAAUUUUUAA GGUAGA            UUUUUGA   CAGU                     CAU               G CU     C  G   G  C      -           -      -CAAGAUAACAA       --C    -------------------AA   GUAGUAUUACUCUAU
Stem-loop sequence	UCAAAAAGGAAAAUGAUCCUUUCUGUUAAAAAUUAUCAUCUCUGCAUAAAAAAAAAAACUUAUGUCAAUGACAAAAUAACCAAACAAUUGCACAUUGCAUGCCACGUGUAUCUCAUUAUGAUGUACAAUGACCAGUUUUUAACAAUAGAACAGAUGGAAUUUUUAACAAAAGGACUAGUUUGCUCUUUGAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012605166.1	ncRNA:24   CUAGUUUCUCGUUUGAUCAGGAAA   1   *|||||||||||||||=||||||| targets:1262   AAUCAAAGAGCAAACUGGUCCUUU   1285 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii uncharacterized LOC105780687 (LOC105780687), transcript variant X3, mRNA	uncharacterized LOC105780687(LOC105780687)	coding protein	psRNATarget
XM_012605165.1	ncRNA:24   CUAGUUUCUCGUUUGAUCAGGAAA   1   *|||||||||||||||=||||||| targets:1322   AAUCAAAGAGCAAACUGGUCCUUU   1345 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii uncharacterized LOC105780687 (LOC105780687), transcript variant X2, mRNA	uncharacterized LOC105780687(LOC105780687)	coding protein	psRNATarget
XM_012625869.1	ncRNA:24   CUAGUUUCUCGUUUGAUCAGGAAA   1   *||||||||*||||||=||||||| targets:1211   AAUCAAAGAACAAACUGGUCCUUU   1234 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii uncharacterized LOC105796268 (LOC105796268), transcript variant X4, mRNA	uncharacterized LOC105796268(LOC105796268)	coding protein	psRNATarget
XM_012613783.1	ncRNA:24   CUAGUUUCUCGUUUGAUCAGGAAA   1   |||=||||||||||||||||*||* targets:1542   GAUUAAAGAGCAAACUAGUCAUUC   1565 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii serine acetyltransferase 4-like (LOC105787406), mRNA	serine acetyltransferase 4-like(LOC105787406)	coding protein	psRNATarget
XM_012624805.1	ncRNA:24   CUAGUUUCUCGUUUGAUCAGGAAA   1   |||*|||||*||||||||||*||| targets:1594   GAUAAAAGAACAAACUAGUCAUUU   1617 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii probable carboxylesterase 7 (LOC105795259), transcript variant X2, mRNA	probable carboxylesterase 7(LOC105795259)	coding protein	psRNATarget