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BaseInfo

ncRNA ID novel_gra_miR304
Species Gossypium raimondii
Class miRNA
Genome position Chr2:22809138-22809301 [+]
Reference genome Graimondii2_0
Source SRR616257
Length 24
Mature sequence(if miRNA) 1 - AUGUCGGUGUAGACUUGGCAACCU - 24
Stem-loop(if miRNA) --            -     -G  -ACC   UA     --------------UC  CACCUUCAUGUUGUAUUGUUUGAUGGAAAACACA
  AUGUCGGUGUAG ACUUG  CA    UUG  AUCAA                GA                                  U
  |||||||||||| |||||  ||    |||  |||||                ||                                  A
  UACGGCUAUAUC UGGAC  GU    AAC  UAGUU                CA                                  G
CA            A     GA  GUCU   UG     UAAACAUCAACUUUCU  ACAAACAACCCAUUACCAAGCUCUUGUUCCGCCU
Stem-loop sequence AUGUCGGUGUAGACUUGGCAACCUUGUAAUCAAUCGACACCUUCAUGUUGUAUUGUUUGAUGGAAAACACAUAGUCCGCCUUGUUCUCGAACCAUUACCCAACAAACAACUCUUUCAACUACAAAUUUGAUGUCAAUCUGUGAGCAGGUACUAUAUCGGCAUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012597852.1
ncRNA:24   UCCAACGGUUCAGAUGUGGCUGUA   1
  ||||*|||||||||||||||||||
targets:23   AGGUCGCCAAGUCUACACCGACAU   46

0.0 PREDICTED: Gossypium raimondii uncharacterized LOC105775331 (LOC105775331), mRNA uncharacterized LOC105775331(LOC105775331) coding protein psRNATarget
XM_012615331.1
ncRNA:24   UCCAACGGUUCAGAUGUGGCUGUA   1
  |*||**=|||||||||||||||||
targets:756   AAGUCAUCAAGUCUACACCGACAU   779

2.0 PREDICTED: Gossypium raimondii uncharacterized LOC105788430 (LOC105788430), mRNA uncharacterized LOC105788430(LOC105788430) coding protein psRNATarget