ncRNA ID | novel_gra_miR304 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | Chr2:22809138-22809301 [+] |
Reference genome | Graimondii2_0 |
Source | SRR616257 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AUGUCGGUGUAGACUUGGCAACCU - 24 |
Stem-loop(if miRNA) |
--            -     -G  -ACC   UA     --------------UC  CACCUUCAUGUUGUAUUGUUUGAUGGAAAACACA   AUGUCGGUGUAG ACUUG  CA    UUG  AUCAA                GA                                  U   |||||||||||| |||||  ||    |||  |||||                ||                                  A   UACGGCUAUAUC UGGAC  GU    AAC  UAGUU                CA                                  G CA            A     GA  GUCU   UG     UAAACAUCAACUUUCU  ACAAACAACCCAUUACCAAGCUCUUGUUCCGCCU |
Stem-loop sequence | AUGUCGGUGUAGACUUGGCAACCUUGUAAUCAAUCGACACCUUCAUGUUGUAUUGUUUGAUGGAAAACACAUAGUCCGCCUUGUUCUCGAACCAUUACCCAACAAACAACUCUUUCAACUACAAAUUUGAUGUCAAUCUGUGAGCAGGUACUAUAUCGGCAUAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_012597852.1 |
|
0.0 | PREDICTED: Gossypium raimondii uncharacterized LOC105775331 (LOC105775331), mRNA | uncharacterized LOC105775331(LOC105775331) | coding protein | psRNATarget | |||||||||
XM_012615331.1 |
|
2.0 | PREDICTED: Gossypium raimondii uncharacterized LOC105788430 (LOC105788430), mRNA | uncharacterized LOC105788430(LOC105788430) | coding protein | psRNATarget |