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BaseInfo

ncRNA ID	novel_gra_miR289
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr12:27012243-27012347 [-]
Reference genome	Graimondii2_0
Source	SRR616256
Length	24
Mature sequence(if miRNA)	1 - AAAAGUAGGCUAAACGCACUGCAC - 24
Stem-loop(if miRNA)	--            -     GG  A  G --AAAA      GUG  ---    AGA   GCGGUGCGUUUA CCUGC  UU GU U      ACAGUG   GC   AGUG   U   |||||||||||| |||||  || || |      ||||||   ||   ||||   CGUCACGCAAAU GGAUG  AA CA A      UGUCAU   CG   UCAU   U CA            C     AA  A  G GUGCGA      -AA  AUA    AGA
Stem-loop sequence	GCGGUGCGUUUACCUGCGGUUAGUGUAAAAACAGUGGUGGCAGUGAGAUUAGAUACUAUAGCAAUACUGUAGCGUGAGACAAAAAGUAGGCUAAACGCACUGCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012600125.1	ncRNA:24   CACGUCACGCAAAUCGGAUGAAAA   1   ||||=||*||||||||=||||||| targets:3087   GUGCGGUACGUUUAGCUUACUUUU   3110 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii probable receptor protein kinase TMK1 (LOC105777067), transcript variant X4, mRNA	probable receptor protein kinase TMK1(LOC105777067)	coding protein	psRNATarget
XM_012600124.1	ncRNA:24   CACGUCACGCAAAUCGGAUGAAAA   1   ||||=||*||||||||=||||||| targets:3081   GUGCGGUACGUUUAGCUUACUUUU   3104 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii probable receptor protein kinase TMK1 (LOC105777067), transcript variant X2, mRNA	probable receptor protein kinase TMK1(LOC105777067)	coding protein	psRNATarget
XM_012598065.1	ncRNA:24   CACGUCACGCAAAUCGGAUGAAAA   1   |*||=||*||||||||=||||||| targets:685   GCGCGGUACGUUUAGCUUACUUUU   708 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii salicylate/benzoate carboxyl methyltransferase-like (LOC105775554), mRNA	salicylate/benzoate carboxyl methyltransferase-like(LOC105775554)	coding protein	psRNATarget
XM_012579456.1	ncRNA:24   CACGUCACGCAAAUCGGAUGAAAA   1   ***||*|||*|||||||||||||* targets:7268   UCUCAAUGCAUUUAGCCUACUUUA   7291 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii uncharacterized LOC105761606 (LOC105761606), mRNA	uncharacterized LOC105761606(LOC105761606)	coding protein	psRNATarget