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BaseInfo

ncRNA ID novel_gra_miR281
Species Gossypium raimondii
Class miRNA
Genome position Chr9:282536-282651 [-]
Reference genome Graimondii2_0
Source SRR616256
Length 22
Mature sequence(if miRNA) 95 - UUGAGUCAAGAAUGACUUGCCG - 116
Stem-loop(if miRNA) --U           UG          --UU   GUCAAAGGUAAUAGGUGAUUAGCCGG
   UGAGUCAAGAA  ACUUGCCGGA    UAC                          C
   |||||||||||  ||||||||||    |||
   ACUUAGUUCUU  UGAACGGCUU    AUU                          U
UCC           GU          UCUA   UACUUUCGGCCCAUUAUAAUUUACUU
Stem-loop sequence UUGAGUCAAGAAUGACUUGCCGGAUUUACGUCAAAGGUAAUAGGUGAUUAGCCGGCUUUCAUUUAAUAUUACCCGGCUUUCAUUUAAUCUUUCGGCAAGUUGUUCUUGAUUCACCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012579564.1
ncRNA:22   GCCGUUCAGUAAGAACUGAGUU   1
  *|||||*|||||||||=|||||
targets:1251   AGGCAAAUCAUUCUUGGCUCAA   1272

2.5 PREDICTED: Gossypium raimondii nuclear transcription factor Y subunit A-10-like (LOC105761685), transcript variant X1, mRNA nuclear transcription factor Y subunit A-10-like(LOC105761685) coding protein psRNATarget