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BaseInfo

ncRNA ID	novel_gra_miR273
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr9:8086504-8086627 [+]
Reference genome	Graimondii2_0
Source	SRR616256;SRR616257
Length	21
Mature sequence(if miRNA)	1 - UGCAUUUGCACCUGCACCUUC - 21
Stem-loop(if miRNA)	--   A                ---C        ---AAUUA   GC     -C    GA   - A   UGC UUUGCACCUGCACCUU    UUGUUUUU        UCU  UUCUG  UUCA  AAC C A   ||| ||||||||||||||||    ||||||||        |||  |||||  ||||  ||| |   ACG GGACGUGGACGUGGAA    AAUAAAAG        AGG  AAGAU  AAGU  UUG G A CG   C                UAAU        ACAAAGCC   AU     AA    AG   U U
Stem-loop sequence	UGCAUUUGCACCUGCACCUUCUUGUUUUUAAUUAUCUGCUUCUGCUUCAGAAACCAAAUGUGUUGAUGAAAAUAGAAUAGGACCGAAACAGAAAAUAAUAAUAAGGUGCAGGUGCAGGCGCAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012631793.1	ncRNA:21   CUUCCACGUCCACGUUUACGU   1   |*||||||||||||||||||| targets:309   GCAGGUGCAGGUGCAAAUGCA   329 Target Full Sequence	0.0	PREDICTED: Gossypium raimondii uncharacterized LOC105800586 (LOC105800586), mRNA	uncharacterized LOC105800586(LOC105800586)	coding protein	psRNATarget
XM_012596289.1	ncRNA:21   CUUCCACGUCCACGUUUACGU   1   |*|||||||||||||=||||| targets:1105   GCAGGUGCAGGUGCAGAUGCA   1125 Target Full Sequence	1.5	PREDICTED: Gossypium raimondii protein ODORANT1-like (LOC105774006), mRNA	protein ODORANT1-like(LOC105774006)	coding protein	psRNATarget
XM_012583521.1	ncRNA:21   CUUCCACGUCCACGUUUACGU   1   |*||||||*|||||||||||* targets:1091   GCAGGUGCUGGUGCAAAUGCC   1111 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY (LOC105764768), mRNA	probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY(LOC105764768)	coding protein	psRNATarget
XM_012615696.1	ncRNA:21   CUUCCACGUCCACGUUUACGU   1   |*||||*|||||*|||||||| targets:558   GCAGGUUCAGGUUCAAAUGCA   578 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transmembrane protein 33 homolog (LOC105788680), transcript variant X3, mRNA	transmembrane protein 33 homolog(LOC105788680)	coding protein	psRNATarget
XM_012615688.1	ncRNA:21   CUUCCACGUCCACGUUUACGU   1   |*||||*|||||*|||||||| targets:508   GCAGGUUCAGGUUCAAAUGCA   528 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transmembrane protein 33 homolog (LOC105788680), transcript variant X2, mRNA	transmembrane protein 33 homolog(LOC105788680)	coding protein	psRNATarget
XM_012615680.1	ncRNA:21   CUUCCACGUCCACGUUUACGU   1   |*||||*|||||*|||||||| targets:556   GCAGGUUCAGGUUCAAAUGCA   576 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transmembrane protein 33 homolog (LOC105788680), transcript variant X1, mRNA	transmembrane protein 33 homolog(LOC105788680)	coding protein	psRNATarget