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BaseInfo

ncRNA ID novel_gra_miR262
Species Gossypium raimondii
Class miRNA
Genome position Chr7:18680484-18680577 [-]
Reference genome Graimondii2_0
Source SRR616256;SRR616255
Length 22
Mature sequence(if miRNA) 1 - CAAGGUUUGUGAUGGCACCUGG - 22
Stem-loop(if miRNA) --    -   AA      A      U  UU     CCA    --     C
  AGGU CCA  AUAGGC UUUGAA AC  AACAU   CGUA  GCAAU G
  |||| |||  |||||| |||||| ||  |||||   ||||  ||||| A
  UCCA GGU  UGUUUG GAACUU UG  UUGUA   GCAU  UGUUG C
GG    C   AG      -      -  CC     --C    GA     C
Stem-loop sequence AGGUCCAAAAUAGGCAUUUGAAUACUUAACAUCCACGUAGCAAUCGACCGUUGUAGUACGCAUGUUCCGUUUCAAGGUUUGUGAUGGCACCUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012632159.1
ncRNA:22   GGUCCACGGUAGUGUUUGGAAC   1
  =*|||||||||||||=|||||*
targets:1747   UAAGGUGCCAUCACAGACCUUA   1768

2.5 PREDICTED: Gossypium raimondii lysine-specific demethylase REF6-like (LOC105800814), mRNA lysine-specific demethylase REF6-like(LOC105800814) coding protein psRNATarget