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BaseInfo

ncRNA ID	novel_gra_miR242
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr8:54626373-54626560 [+]
Reference genome	Graimondii2_0
Source	SRR616255;SRR616256
Length	22
Mature sequence(if miRNA)	1 - UCUUGCUCAAAUGAGUAUUCCA - 22
Stem-loop(if miRNA)	--U      C          UC  --AUC    UU   UU   A    CAUAUAUAUAUUCACACUCAUAAAACCAAAAAACAAAACACAAAACA    CUUGCU AAAUGAGUAU  CA     ACAG  GCA  UGC UAUA                                               C    |||||| ||||||||||  ||     ||||  |||  ||| ||||    GAACGA UUUACUCGUA  GU     UGUC  CGU  ACG AGUA                                               A AAC      A          GA  CUUUU    UU   UU   U    UUUUGGUUUGUAUACCAUUUUGUACCCUGUAAUUAUGUCUGGGUACA
Stem-loop sequence	UCUUGCUCAAAUGAGUAUUCCAAUCACAGUUGCAUUUGCAUAUACAUAUAUAUAUUCACACUCAUAAAACCAAAAAACAAAACACAAAACACAACAUGGGUCUGUAUUAAUGUCCCAUGUUUUACCAUAUGUUUGGUUUUAUGAUGCAUUUGCUUCUGUUUUUCUGAGAUGCUCAUUUAAGCAAGCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012587135.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||*||||||||||||||| targets:482   UGGAAUUCUCAUUUGAGCAAGA   503 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii transcription factor MYB114-like (LOC105767566), transcript variant X2, mRNA	transcription factor MYB114-like(LOC105767566)	coding protein	psRNATarget
XM_012605614.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||*||||||||||||||| targets:538   UGGAAUUCUCAUUUGAGCAAGA   559 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii transcription factor MYB114-like (LOC105781041), mRNA	transcription factor MYB114-like(LOC105781041)	coding protein	psRNATarget
XM_012587134.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||*||||||||||||||| targets:482   UGGAAUUCUCAUUUGAGCAAGA   503 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii transcription factor MYB114-like (LOC105767566), transcript variant X1, mRNA	transcription factor MYB114-like(LOC105767566)	coding protein	psRNATarget
XM_012597383.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||*||||||||||||||| targets:395   UGGAAUUCUCAUUUGAGCAAGA   416 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii transcription factor MYB114-like (LOC105774811), mRNA	transcription factor MYB114-like(LOC105774811)	coding protein	psRNATarget
XM_012592262.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||*||||||||||||||| targets:451   UGGAAUUCUCAUUUGAGCAAGA   472 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii transcription factor MYB114-like (LOC105770901), mRNA	transcription factor MYB114-like(LOC105770901)	coding protein	psRNATarget
XM_012585284.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||*||||||||||||||| targets:385   UGGAAUUCUCAUUUGAGCAAGA   406 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii transcription factor MYB114-like (LOC105765990), transcript variant X2, mRNA	transcription factor MYB114-like(LOC105765990)	coding protein	psRNATarget
XM_012585283.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||*||||||||||||||| targets:385   UGGAAUUCUCAUUUGAGCAAGA   406 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii transcription factor MYB114-like (LOC105765990), transcript variant X1, mRNA	transcription factor MYB114-like(LOC105765990)	coding protein	psRNATarget
NM_001309349.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||*|*||||||||||||| targets:325   UGGAAUUCCCAUUUGAGCAAGA   346 Target Full Sequence	2.0	Gossypium raimondii transcription factor WER-like (LOC105792052), mRNA	transcription factor WER-like(LOC105792052)	coding protein	psRNATarget
JQ868559.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||*|*||||||||||||| targets:325   UGGAAUUCCCAUUUGAGCAAGA   346 Target Full Sequence	2.0	Gossypium raimondii isolate D5 MYB2 mRNA, complete cds	NA	coding protein	psRNATarget
XM_012632907.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   |||||*||||||||||||||*| targets:426   UGGAACACUCAUUUGAGCAAAA   447 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transcription factor MYB114-like (LOC105801686), mRNA	transcription factor MYB114-like(LOC105801686)	coding protein	psRNATarget
XM_012621673.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||||*|||||||*||||| targets:436   UGGAAUACCCAUUUGAACAAGA   457 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii myb-related protein 308-like (LOC105792854), mRNA	myb-related protein 308-like(LOC105792854)	coding protein	psRNATarget
XM_012602566.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   |||||||*|||||||||*|||| targets:441   UGGAAUAGUCAUUUGAGGAAGA   462 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transcription factor WER (LOC105778805), mRNA	transcription factor WER(LOC105778805)	coding protein	psRNATarget
XM_012591477.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   ||||||||*|||||||*||||| targets:382   UGGAAUACCCAUUUGAACAAGA   403 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii transcription factor MYB82-like (LOC105770326), mRNA	transcription factor MYB82-like(LOC105770326)	coding protein	psRNATarget
XM_012604244.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   **||=||=*||||||||||||| targets:463   GAGAGUAUGCAUUUGAGCAAGA   484 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii kinesin-3-like (LOC105780108), transcript variant X2, mRNA	kinesin-3-like(LOC105780108)	coding protein	psRNATarget
XM_012604236.1	ncRNA:22   ACCUUAUGAGUAAACUCGUUCU   1   **||=||=*||||||||||||| targets:573   GAGAGUAUGCAUUUGAGCAAGA   594 Target Full Sequence	3.0	PREDICTED: Gossypium raimondii kinesin-3-like (LOC105780108), transcript variant X1, mRNA	kinesin-3-like(LOC105780108)	coding protein	psRNATarget