ncRNA ID | novel_gra_miR239 |
Species | Gossypium raimondii |
Class | miRNA |
Genome position | Chr2:2250572-2250650 [-] |
Reference genome | Graimondii2_0 |
Source | SRR616256 |
Length | 19 |
Mature sequence(if miRNA) | 1 - UAUACCGUGCCCAUGACUG - 19 |
Stem-loop(if miRNA) |
--                  A        UU   UGAUU   GUUAUGGGCACGGUAUGG UUGCUGUU  UGA     U   |||||||||||||||||| ||||||||  |||     G   CAGUACCCGUGCCAUAUU AACGACAA  ACU     U GU                  A        UU   UUCGU |
Stem-loop sequence | GUUAUGGGCACGGUAUGGAUUGCUGUUUUUGAUGAUUUGUUGCUUUCAUUAACAGCAAAUUAUACCGUGCCCAUGACUG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_012627547.1 |
|
2.5 | PREDICTED: Gossypium raimondii serine/threonine-protein phosphatase 7 long form homolog (LOC105797601), mRNA | serine/threonine-protein phosphatase 7 long form homolog(LOC105797601) | coding protein | psRNATarget | |||||||||
XM_012632792.1 |
|
2.5 | PREDICTED: Gossypium raimondii serine/threonine-protein phosphatase 7 long form homolog (LOC105801525), mRNA | serine/threonine-protein phosphatase 7 long form homolog(LOC105801525) | coding protein | psRNATarget |