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BaseInfo

ncRNA ID novel_gra_miR239
Species Gossypium raimondii
Class miRNA
Genome position Chr2:2250572-2250650 [-]
Reference genome Graimondii2_0
Source SRR616256
Length 19
Mature sequence(if miRNA) 1 - UAUACCGUGCCCAUGACUG - 19
Stem-loop(if miRNA) --                  A        UU   UGAUU
  GUUAUGGGCACGGUAUGG UUGCUGUU  UGA     U
  |||||||||||||||||| ||||||||  |||     G
  CAGUACCCGUGCCAUAUU AACGACAA  ACU     U
GU                  A        UU   UUCGU
Stem-loop sequence GUUAUGGGCACGGUAUGGAUUGCUGUUUUUGAUGAUUUGUUGCUUUCAUUAACAGCAAAUUAUACCGUGCCCAUGACUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_012627547.1
ncRNA:19   GUCAGUACCCGUGCCAUAU   1
  ||||||||||||||||*|*
targets:362   CAGUCAUGGGCACGGUUUC   380

2.5 PREDICTED: Gossypium raimondii serine/threonine-protein phosphatase 7 long form homolog (LOC105797601), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC105797601) coding protein psRNATarget
XM_012632792.1
ncRNA:19   GUCAGUACCCGUGCCAUAU   1
  ||||||||||||||||*|*
targets:555   CAGUCAUGGGCACGGUUUC   573

2.5 PREDICTED: Gossypium raimondii serine/threonine-protein phosphatase 7 long form homolog (LOC105801525), mRNA serine/threonine-protein phosphatase 7 long form homolog(LOC105801525) coding protein psRNATarget