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BaseInfo

ncRNA ID	novel_gra_miR238
Species	Gossypium raimondii
Class	miRNA
Genome position	Chr2:42023221-42023428 [-]
Reference genome	Graimondii2_0
Source	SRR616256
Length	20
Mature sequence(if miRNA)	1 - AUGGCCUUUAGCGGCGUUUG - 20
Stem-loop(if miRNA)	--             AA    GC     A     ----UUUA  GG AAA            AACAUAGCCUUUAGCGGCGUUUUCGAAAAAAGCGCCGCUAAAGAAC   AGCGCCGCUAAAG  CAUG  CUUUA CGGCG        CG  A   GCGCCGCUAAAG                                              A   |||||||||||||  ||||  ||||| |||||        ||  |   ||||||||||||                                              U   UUGCGGCGAUUUC  GUAC  GAAAU GCCGU        UU  U   UUGCGGCGAUUU                                              G GU             CG    AA     C     GAAAAAAG  -- ---            CCGGUACAAGAAAUCGCCGUGAAAAAAGCUUUUGCGGCGAUUUCCG
Stem-loop sequence	AGCGCCGCUAAAGAACAUGGCCUUUAACGGCGUUUACGGGAAAAGCGCCGCUAAAGAACAUAGCCUUUAGCGGCGUUUUCGAAAAAAGCGCCGCUAAAGAACAUGGCCUUUAGCGGCGUUUUCGAAAAAAGUGCCGCUAAAGAACAUGGCCUUUAGCGGCGUUUUUGAAAAAAGUGCCGCUAAAGAACAUGGCCUUUAGCGGCGUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_012585291.1	ncRNA:20   GUUUGCGGCGAUUUCCGGUA   1   *||=|||||||||||||||| targets:756   AAAGCGCCGCUAAAGGCCAU   775 Target Full Sequence	1.0	PREDICTED: Gossypium raimondii DEAD-box ATP-dependent RNA helicase 56-like (LOC105765998), transcript variant X1, mRNA	DEAD-box ATP-dependent RNA helicase 56-like(LOC105765998)	coding protein	psRNATarget
XM_012585291.1	ncRNA:20   GUUUGCGGCGAUUUCCGGUA   1   *||=|||||||||||*|||| targets:799   AAAGCGCCGCUAAAGUCCAU   818 Target Full Sequence	2.5	PREDICTED: Gossypium raimondii DEAD-box ATP-dependent RNA helicase 56-like (LOC105765998), transcript variant X1, mRNA	DEAD-box ATP-dependent RNA helicase 56-like(LOC105765998)	coding protein	psRNATarget